miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8985 3' -58.5 NC_002512.2 + 108460 0.69 0.748205
Target:  5'- cCGGGGCcgacuccgcGGgCGUCUcccUCCACGCCaGGCGc -3'
miRNA:   3'- -GCUCCG---------CCgGCAGA---AGGUGUGG-CUGU- -5'
8985 3' -58.5 NC_002512.2 + 65426 0.7 0.69172
Target:  5'- -cGGGCGGUCGUCgcCCcCGCCGAgGg -3'
miRNA:   3'- gcUCCGCCGGCAGaaGGuGUGGCUgU- -5'
8985 3' -58.5 NC_002512.2 + 135325 0.7 0.69172
Target:  5'- cCGAGGuCGG-CGUCagCCGCGCCGGg- -3'
miRNA:   3'- -GCUCC-GCCgGCAGaaGGUGUGGCUgu -5'
8985 3' -58.5 NC_002512.2 + 79940 0.7 0.69172
Target:  5'- cCGAGGCGGCgCGggggUCCGCcuGCCGuCGg -3'
miRNA:   3'- -GCUCCGCCG-GCaga-AGGUG--UGGCuGU- -5'
8985 3' -58.5 NC_002512.2 + 69081 0.7 0.69268
Target:  5'- cCGGGGCGGCUGguacugcugccguggCUgcugCUGCGCCGGCc -3'
miRNA:   3'- -GCUCCGCCGGCa--------------GAa---GGUGUGGCUGu -5'
8985 3' -58.5 NC_002512.2 + 103441 0.7 0.710811
Target:  5'- -aAGGCGGCCG-CcgCCGuCGCCGGCc -3'
miRNA:   3'- gcUCCGCCGGCaGaaGGU-GUGGCUGu -5'
8985 3' -58.5 NC_002512.2 + 122050 0.7 0.710811
Target:  5'- cCGGGGCGG-CGUCggCgGCugUGACGa -3'
miRNA:   3'- -GCUCCGCCgGCAGaaGgUGugGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 82012 0.7 0.714603
Target:  5'- uCGcGGCGaGCCGUCgcccgggucggggUCGCGCCGGCGg -3'
miRNA:   3'- -GCuCCGC-CGGCAGaa-----------GGUGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 124081 0.69 0.742677
Target:  5'- gGGGGCuucuccGCCGUCUUcgcccucgccgucgaCCAUGCCGACGc -3'
miRNA:   3'- gCUCCGc-----CGGCAGAA---------------GGUGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 226096 0.71 0.67245
Target:  5'- gGAGGCGucGCCGUCUucaUCUGCugCGuCAg -3'
miRNA:   3'- gCUCCGC--CGGCAGA---AGGUGugGCuGU- -5'
8985 3' -58.5 NC_002512.2 + 83989 0.71 0.633611
Target:  5'- gCGGGGCGGUCGcgcagCUucaggUCCAgguCGCCGACGa -3'
miRNA:   3'- -GCUCCGCCGGCa----GA-----AGGU---GUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 10553 0.71 0.623881
Target:  5'- -cGGGCaGCCGgCgggCCACGCCGACGc -3'
miRNA:   3'- gcUCCGcCGGCaGaa-GGUGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 89360 0.77 0.342588
Target:  5'- uCGAGGCGGCCGUCc-UgGCGCCGuACGu -3'
miRNA:   3'- -GCUCCGCCGGCAGaaGgUGUGGC-UGU- -5'
8985 3' -58.5 NC_002512.2 + 101607 0.75 0.412679
Target:  5'- -cGGGCGGCCGUCggCCcgGCGCCGGg- -3'
miRNA:   3'- gcUCCGCCGGCAGaaGG--UGUGGCUgu -5'
8985 3' -58.5 NC_002512.2 + 137229 0.75 0.430263
Target:  5'- -cGGGCGGCCGUCccggauccgcgcgggUCCcgGCGCCGGCGg -3'
miRNA:   3'- gcUCCGCCGGCAGa--------------AGG--UGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 126973 0.75 0.446546
Target:  5'- uGGGGCccguGGCCGUCgaCCGCGCCaGGCGc -3'
miRNA:   3'- gCUCCG----CCGGCAGaaGGUGUGG-CUGU- -5'
8985 3' -58.5 NC_002512.2 + 147451 0.74 0.463166
Target:  5'- aGAcGGCGGCCGUCUgucgcugcuggucUUCGCGCgGGCGc -3'
miRNA:   3'- gCU-CCGCCGGCAGA-------------AGGUGUGgCUGU- -5'
8985 3' -58.5 NC_002512.2 + 6430 0.73 0.537311
Target:  5'- -aAGGCGGCCGUCUggcggGCGCCGAg- -3'
miRNA:   3'- gcUCCGCCGGCAGAagg--UGUGGCUgu -5'
8985 3' -58.5 NC_002512.2 + 134133 0.73 0.546771
Target:  5'- -cAGGCGGCCGUCgcggcgcgcgUCCcgGCCGGCGg -3'
miRNA:   3'- gcUCCGCCGGCAGa---------AGGugUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 135247 0.72 0.585082
Target:  5'- uCGAGGCcGUCGUCcgcgCCGCGCuCGACGa -3'
miRNA:   3'- -GCUCCGcCGGCAGaa--GGUGUG-GCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.