miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8985 3' -58.5 NC_002512.2 + 1976 0.69 0.775311
Target:  5'- gGAGGCGGCgCGUCcgucUCCGCcuCgGACu -3'
miRNA:   3'- gCUCCGCCG-GCAGa---AGGUGu-GgCUGu -5'
8985 3' -58.5 NC_002512.2 + 3072 0.66 0.903745
Target:  5'- gCGGcGGCGGCgG-CggCCACGgCGGCGg -3'
miRNA:   3'- -GCU-CCGCCGgCaGaaGGUGUgGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 4017 0.66 0.903148
Target:  5'- cCGAGGCGgaGCCGUgUucauguacuacggUCCAC-CCGAgAa -3'
miRNA:   3'- -GCUCCGC--CGGCAgA-------------AGGUGuGGCUgU- -5'
8985 3' -58.5 NC_002512.2 + 5005 0.66 0.903745
Target:  5'- uCGaAGGCGGCCGgcgaggCgggaaaCCAgGCCGugGc -3'
miRNA:   3'- -GC-UCCGCCGGCa-----Gaa----GGUgUGGCugU- -5'
8985 3' -58.5 NC_002512.2 + 6316 0.67 0.849582
Target:  5'- uCGAGGUGGCCGcCgcCCGCggggggACCGGg- -3'
miRNA:   3'- -GCUCCGCCGGCaGaaGGUG------UGGCUgu -5'
8985 3' -58.5 NC_002512.2 + 6430 0.73 0.537311
Target:  5'- -aAGGCGGCCGUCUggcggGCGCCGAg- -3'
miRNA:   3'- gcUCCGCCGGCAGAagg--UGUGGCUgu -5'
8985 3' -58.5 NC_002512.2 + 7398 0.66 0.891407
Target:  5'- aGaAGGCGGCCaccg-CCACGuuGACGa -3'
miRNA:   3'- gC-UCCGCCGGcagaaGGUGUggCUGU- -5'
8985 3' -58.5 NC_002512.2 + 7760 0.68 0.834159
Target:  5'- cCGGGGCGGuaGUCggCCGCGgaGAUg -3'
miRNA:   3'- -GCUCCGCCggCAGaaGGUGUggCUGu -5'
8985 3' -58.5 NC_002512.2 + 10162 0.68 0.826196
Target:  5'- gCGAGGCacgggGGCCGccUCUcgcgCCccgaGCGCCGACGc -3'
miRNA:   3'- -GCUCCG-----CCGGC--AGAa---GG----UGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 10553 0.71 0.623881
Target:  5'- -cGGGCaGCCGgCgggCCACGCCGACGc -3'
miRNA:   3'- gcUCCGcCGGCaGaa-GGUGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 10649 0.67 0.878246
Target:  5'- aGAGGCGGCCGagcacgaUCCcgaccuCGCCGAg- -3'
miRNA:   3'- gCUCCGCCGGCaga----AGGu-----GUGGCUgu -5'
8985 3' -58.5 NC_002512.2 + 12304 0.68 0.834159
Target:  5'- cCGAGGCGGCg--CcgCCGgACCGGCu -3'
miRNA:   3'- -GCUCCGCCGgcaGaaGGUgUGGCUGu -5'
8985 3' -58.5 NC_002512.2 + 25893 0.66 0.903745
Target:  5'- aGAGGCGGUCGUaCUcggUCCGgAuCCGGu- -3'
miRNA:   3'- gCUCCGCCGGCA-GA---AGGUgU-GGCUgu -5'
8985 3' -58.5 NC_002512.2 + 28236 0.67 0.857029
Target:  5'- cCGcGGCcggGGCCGUCgcgCCGCGaguaCGACGg -3'
miRNA:   3'- -GCuCCG---CCGGCAGaa-GGUGUg---GCUGU- -5'
8985 3' -58.5 NC_002512.2 + 28523 0.66 0.891407
Target:  5'- gGGGGUGaGCUGUCgggUCCGCcgccgcCCGAUg -3'
miRNA:   3'- gCUCCGC-CGGCAGa--AGGUGu-----GGCUGu -5'
8985 3' -58.5 NC_002512.2 + 29964 0.66 0.903745
Target:  5'- aGcGGCGGCCGg---CCGCGaacggaCGACAg -3'
miRNA:   3'- gCuCCGCCGGCagaaGGUGUg-----GCUGU- -5'
8985 3' -58.5 NC_002512.2 + 34411 0.74 0.46405
Target:  5'- uGAuuGGCGGCCGUCUUCUgACGaCGACGa -3'
miRNA:   3'- gCU--CCGCCGGCAGAAGG-UGUgGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 37273 0.68 0.818073
Target:  5'- uGAGGCcGCCGUCgcCCGC-CgCGGCGc -3'
miRNA:   3'- gCUCCGcCGGCAGaaGGUGuG-GCUGU- -5'
8985 3' -58.5 NC_002512.2 + 39112 0.66 0.897062
Target:  5'- gGAGaacgaacaccuGUGGCUGUgucgagacgaucgCUUCUGCGCCGACAu -3'
miRNA:   3'- gCUC-----------CGCCGGCA-------------GAAGGUGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 39668 0.66 0.903745
Target:  5'- aGAcGUGGCCGUCccggacgaCCGCGCCGcCGa -3'
miRNA:   3'- gCUcCGCCGGCAGaa------GGUGUGGCuGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.