Results 1 - 20 of 165 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8985 | 3' | -58.5 | NC_002512.2 | + | 96632 | 0.66 | 0.909599 |
Target: 5'- --cGGCGGCa-UCUUCCcCGCCGGg- -3' miRNA: 3'- gcuCCGCCGgcAGAAGGuGUGGCUgu -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 67722 | 0.66 | 0.909599 |
Target: 5'- gGAcGCGGCCG-CUUUCGCggucggcguGCCGGCc -3' miRNA: 3'- gCUcCGCCGGCaGAAGGUG---------UGGCUGu -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 117407 | 0.66 | 0.891407 |
Target: 5'- uCGAGGaccaGGgCGUCaUCCGCuCCGAg- -3' miRNA: 3'- -GCUCCg---CCgGCAGaAGGUGuGGCUgu -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 3072 | 0.66 | 0.903745 |
Target: 5'- gCGGcGGCGGCgG-CggCCACGgCGGCGg -3' miRNA: 3'- -GCU-CCGCCGgCaGaaGGUGUgGCUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 70894 | 0.66 | 0.89768 |
Target: 5'- cCGGGGCcGCCGcC-UCCGCcccGCCGugGc -3' miRNA: 3'- -GCUCCGcCGGCaGaAGGUG---UGGCugU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 25893 | 0.66 | 0.903745 |
Target: 5'- aGAGGCGGUCGUaCUcggUCCGgAuCCGGu- -3' miRNA: 3'- gCUCCGCCGGCA-GA---AGGUgU-GGCUgu -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 126245 | 0.66 | 0.909599 |
Target: 5'- cCGAGGagGGCCGggugUCCgaaGCCGACc -3' miRNA: 3'- -GCUCCg-CCGGCaga-AGGug-UGGCUGu -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 79123 | 0.66 | 0.89582 |
Target: 5'- cCGAGuCGGCCGUCaaucacgggucugggCCGCgcgcggGCCGACGg -3' miRNA: 3'- -GCUCcGCCGGCAGaa-------------GGUG------UGGCUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 39668 | 0.66 | 0.903745 |
Target: 5'- aGAcGUGGCCGUCccggacgaCCGCGCCGcCGa -3' miRNA: 3'- gCUcCGCCGGCAGaa------GGUGUGGCuGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 179432 | 0.66 | 0.909599 |
Target: 5'- uGGGuuucGCGGCCGgcgUCUUCUggacauccgGCGCCGGCc -3' miRNA: 3'- gCUC----CGCCGGC---AGAAGG---------UGUGGCUGu -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 119031 | 0.66 | 0.89768 |
Target: 5'- aCGGGcCGGCCGUCgugggCCuguuCGCCGcGCAc -3' miRNA: 3'- -GCUCcGCCGGCAGaa---GGu---GUGGC-UGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 70486 | 0.66 | 0.89768 |
Target: 5'- --uGGCGaCCGgacCUUCCGCcCCGACGc -3' miRNA: 3'- gcuCCGCcGGCa--GAAGGUGuGGCUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 28523 | 0.66 | 0.891407 |
Target: 5'- gGGGGUGaGCUGUCgggUCCGCcgccgcCCGAUg -3' miRNA: 3'- gCUCCGC-CGGCAGa--AGGUGu-----GGCUGu -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 5005 | 0.66 | 0.903745 |
Target: 5'- uCGaAGGCGGCCGgcgaggCgggaaaCCAgGCCGugGc -3' miRNA: 3'- -GC-UCCGCCGGCa-----Gaa----GGUgUGGCugU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 64553 | 0.66 | 0.901948 |
Target: 5'- aGAGGUgcgggauguccccaGGCCGUag-CCGCACagCGACGa -3' miRNA: 3'- gCUCCG--------------CCGGCAgaaGGUGUG--GCUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 29964 | 0.66 | 0.903745 |
Target: 5'- aGcGGCGGCCGg---CCGCGaacggaCGACAg -3' miRNA: 3'- gCuCCGCCGGCagaaGGUGUg-----GCUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 207656 | 0.66 | 0.907865 |
Target: 5'- --cGGCGGCCGUgguggcgucccgggCUcUCC-CGCCGGCc -3' miRNA: 3'- gcuCCGCCGGCA--------------GA-AGGuGUGGCUGu -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 7398 | 0.66 | 0.891407 |
Target: 5'- aGaAGGCGGCCaccg-CCACGuuGACGa -3' miRNA: 3'- gC-UCCGCCGGcagaaGGUGUggCUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 107876 | 0.66 | 0.89768 |
Target: 5'- gGAGGCcgucgucaccuuGGCCGccgcgaUCUUCCucucguccCGCCGGCGg -3' miRNA: 3'- gCUCCG------------CCGGC------AGAAGGu-------GUGGCUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 113920 | 0.66 | 0.909599 |
Target: 5'- aCGAGGCGGaCGU--UCCAC-UCGGCc -3' miRNA: 3'- -GCUCCGCCgGCAgaAGGUGuGGCUGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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