miRNA display CGI


Results 21 - 40 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8985 3' -58.5 NC_002512.2 + 47457 0.68 0.818073
Target:  5'- gGAGGCcgaGGCCGagUUCCGCAa-GGCGg -3'
miRNA:   3'- gCUCCG---CCGGCagAAGGUGUggCUGU- -5'
8985 3' -58.5 NC_002512.2 + 53864 0.68 0.792816
Target:  5'- aGAGGgGGaCCGUCcgUUCCccagGgACCGACGg -3'
miRNA:   3'- gCUCCgCC-GGCAG--AAGG----UgUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 64553 0.66 0.901948
Target:  5'- aGAGGUgcgggauguccccaGGCCGUag-CCGCACagCGACGa -3'
miRNA:   3'- gCUCCG--------------CCGGCAgaaGGUGUG--GCUGU- -5'
8985 3' -58.5 NC_002512.2 + 65426 0.7 0.69172
Target:  5'- -cGGGCGGUCGUCgcCCcCGCCGAgGg -3'
miRNA:   3'- gcUCCGCCGGCAGaaGGuGUGGCUgU- -5'
8985 3' -58.5 NC_002512.2 + 67722 0.66 0.909599
Target:  5'- gGAcGCGGCCG-CUUUCGCggucggcguGCCGGCc -3'
miRNA:   3'- gCUcCGCCGGCaGAAGGUG---------UGGCUGu -5'
8985 3' -58.5 NC_002512.2 + 68902 0.67 0.841957
Target:  5'- cCGGGGCGGUCGUgCUgcuggCCGC-CgCGGCc -3'
miRNA:   3'- -GCUCCGCCGGCA-GAa----GGUGuG-GCUGu -5'
8985 3' -58.5 NC_002512.2 + 69081 0.7 0.69268
Target:  5'- cCGGGGCGGCUGguacugcugccguggCUgcugCUGCGCCGGCc -3'
miRNA:   3'- -GCUCCGCCGGCa--------------GAa---GGUGUGGCUGu -5'
8985 3' -58.5 NC_002512.2 + 70486 0.66 0.89768
Target:  5'- --uGGCGaCCGgacCUUCCGCcCCGACGc -3'
miRNA:   3'- gcuCCGCcGGCa--GAAGGUGuGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 70894 0.66 0.89768
Target:  5'- cCGGGGCcGCCGcC-UCCGCcccGCCGugGc -3'
miRNA:   3'- -GCUCCGcCGGCaGaAGGUG---UGGCugU- -5'
8985 3' -58.5 NC_002512.2 + 79123 0.66 0.89582
Target:  5'- cCGAGuCGGCCGUCaaucacgggucugggCCGCgcgcggGCCGACGg -3'
miRNA:   3'- -GCUCcGCCGGCAGaa-------------GGUG------UGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 79940 0.7 0.69172
Target:  5'- cCGAGGCGGCgCGggggUCCGCcuGCCGuCGg -3'
miRNA:   3'- -GCUCCGCCG-GCaga-AGGUG--UGGCuGU- -5'
8985 3' -58.5 NC_002512.2 + 81610 0.68 0.808962
Target:  5'- uGAGGUgcucgucggccagGGCCGUCgccacgUCCAgGCuCGGCGc -3'
miRNA:   3'- gCUCCG-------------CCGGCAGa-----AGGUgUG-GCUGU- -5'
8985 3' -58.5 NC_002512.2 + 82012 0.7 0.714603
Target:  5'- uCGcGGCGaGCCGUCgcccgggucggggUCGCGCCGGCGg -3'
miRNA:   3'- -GCuCCGC-CGGCAGaa-----------GGUGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 83989 0.71 0.633611
Target:  5'- gCGGGGCGGUCGcgcagCUucaggUCCAgguCGCCGACGa -3'
miRNA:   3'- -GCUCCGCCGGCa----GA-----AGGU---GUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 84643 0.67 0.849582
Target:  5'- aGGcGGCGGCCcaggaaguUCUcgUCGCGCCGGCAc -3'
miRNA:   3'- gCU-CCGCCGGc-------AGAa-GGUGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 89360 0.77 0.342588
Target:  5'- uCGAGGCGGCCGUCc-UgGCGCCGuACGu -3'
miRNA:   3'- -GCUCCGCCGGCAGaaGgUGUGGC-UGU- -5'
8985 3' -58.5 NC_002512.2 + 91869 0.67 0.849582
Target:  5'- cCGAGGCcGCCGUC--CgGCGCgGGCGg -3'
miRNA:   3'- -GCUCCGcCGGCAGaaGgUGUGgCUGU- -5'
8985 3' -58.5 NC_002512.2 + 92594 0.67 0.878246
Target:  5'- aGGGGCGGCgGUCccgaggCCGguCgCGACGa -3'
miRNA:   3'- gCUCCGCCGgCAGaa----GGUguG-GCUGU- -5'
8985 3' -58.5 NC_002512.2 + 92733 0.67 0.864292
Target:  5'- gGGGGCGcGCuCGg--UCCgaugGCGCCGACGa -3'
miRNA:   3'- gCUCCGC-CG-GCagaAGG----UGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 95642 0.68 0.834159
Target:  5'- gGGGGCGGCuCGg---CCGCccCCGGCAc -3'
miRNA:   3'- gCUCCGCCG-GCagaaGGUGu-GGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.