miRNA display CGI


Results 41 - 60 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8987 5' -57.8 NC_002512.2 + 91853 0.67 0.867916
Target:  5'- -cGCAgGAUGUCGGCUCgGAagucggauccGUACGu -3'
miRNA:   3'- caCGUgCUGCAGCCGAGgCU----------CGUGUg -5'
8987 5' -57.8 NC_002512.2 + 91896 0.7 0.741737
Target:  5'- -gGCGCGGCGcaCGGC-CCGcucgggcccGGCACGCa -3'
miRNA:   3'- caCGUGCUGCa-GCCGaGGC---------UCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 91922 0.69 0.796107
Target:  5'- -gGCGCGcCGUCGGCggCCGAcuuggucuuggGCGCGa -3'
miRNA:   3'- caCGUGCuGCAGCCGa-GGCU-----------CGUGUg -5'
8987 5' -57.8 NC_002512.2 + 92558 0.67 0.845538
Target:  5'- -gGCgACGACGUCGGaggcgCCGAcGC-CGCg -3'
miRNA:   3'- caCG-UGCUGCAGCCga---GGCU-CGuGUG- -5'
8987 5' -57.8 NC_002512.2 + 92657 0.66 0.918636
Target:  5'- -cGCGCGGaucCGggaCGGCcgcccgcgCCGGGCGCGCc -3'
miRNA:   3'- caCGUGCU---GCa--GCCGa-------GGCUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 94881 0.68 0.840863
Target:  5'- cGUGUAgGAUGUCGGUccacgucagcagcucUCggggCGAGCACAUg -3'
miRNA:   3'- -CACGUgCUGCAGCCG---------------AG----GCUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 95090 0.68 0.837711
Target:  5'- -aGCGagacCGGCGUCgGGC-CCGGGgACGCg -3'
miRNA:   3'- caCGU----GCUGCAG-CCGaGGCUCgUGUG- -5'
8987 5' -57.8 NC_002512.2 + 95981 0.68 0.821542
Target:  5'- -cGCAgCGGCgGUCGGCgUCCG-GCGcCGCg -3'
miRNA:   3'- caCGU-GCUG-CAGCCG-AGGCuCGU-GUG- -5'
8987 5' -57.8 NC_002512.2 + 101603 0.68 0.821542
Target:  5'- cGUGCggGCGGcCGUCGGC-CCG-GCGC-Cg -3'
miRNA:   3'- -CACG--UGCU-GCAGCCGaGGCuCGUGuG- -5'
8987 5' -57.8 NC_002512.2 + 103629 0.69 0.769433
Target:  5'- -cGCugGAgGUCGGCUUCGGaCACcCg -3'
miRNA:   3'- caCGugCUgCAGCCGAGGCUcGUGuG- -5'
8987 5' -57.8 NC_002512.2 + 107006 0.73 0.566278
Target:  5'- -gGC-CGGgGUCGGCcgagagCCGGGCGCGCu -3'
miRNA:   3'- caCGuGCUgCAGCCGa-----GGCUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 110719 0.69 0.751069
Target:  5'- cUGCAUGGCGUUGGCcagggCCGuguuguGCAgGCg -3'
miRNA:   3'- cACGUGCUGCAGCCGa----GGCu-----CGUgUG- -5'
8987 5' -57.8 NC_002512.2 + 111334 0.72 0.625143
Target:  5'- aUGC-CGuuGUUGGCgucCCGGGCGCGCa -3'
miRNA:   3'- cACGuGCugCAGCCGa--GGCUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 112918 0.7 0.741737
Target:  5'- -gGaCGgGGCGUCGGCggcCCGguGGCGCGCg -3'
miRNA:   3'- caC-GUgCUGCAGCCGa--GGC--UCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 114780 0.79 0.266293
Target:  5'- cUGCGCGAUGUUGGC-CCGcuGCACGCg -3'
miRNA:   3'- cACGUGCUGCAGCCGaGGCu-CGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 115673 0.68 0.837711
Target:  5'- cUGCACGugGgcUCGGg-CCGGGCcuacaGCACg -3'
miRNA:   3'- cACGUGCugC--AGCCgaGGCUCG-----UGUG- -5'
8987 5' -57.8 NC_002512.2 + 116116 0.7 0.741737
Target:  5'- cGUGCcCGagaucgacgacuGCGUCGGCUCCauGAccGCGCACc -3'
miRNA:   3'- -CACGuGC------------UGCAGCCGAGG--CU--CGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 116132 0.69 0.787343
Target:  5'- uGUGCAcgccgcguauCGugGUCGGCaacauccCCGAGC-CGCu -3'
miRNA:   3'- -CACGU----------GCugCAGCCGa------GGCUCGuGUG- -5'
8987 5' -57.8 NC_002512.2 + 117396 0.76 0.414436
Target:  5'- cGUGCACGgcaucgaggaccaggGCGUCauccGCUCCGAGCGCGa -3'
miRNA:   3'- -CACGUGC---------------UGCAGc---CGAGGCUCGUGUg -5'
8987 5' -57.8 NC_002512.2 + 119933 0.68 0.82971
Target:  5'- -aGCGCGGCGUC-GC-CCccGCACGCg -3'
miRNA:   3'- caCGUGCUGCAGcCGaGGcuCGUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.