miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8987 5' -57.8 NC_002512.2 + 48511 0.67 0.867916
Target:  5'- -cGCACGACGacgcgCGGCUgCUGaAGCugAUc -3'
miRNA:   3'- caCGUGCUGCa----GCCGA-GGC-UCGugUG- -5'
8987 5' -57.8 NC_002512.2 + 50018 0.69 0.751069
Target:  5'- gGUGCACGuCGUCGuGaCggUGGGCGCGCa -3'
miRNA:   3'- -CACGUGCuGCAGC-C-GagGCUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 53745 0.66 0.91305
Target:  5'- cUGCGCGACGUCcGCggaUCGAG-AUACg -3'
miRNA:   3'- cACGUGCUGCAGcCGa--GGCUCgUGUG- -5'
8987 5' -57.8 NC_002512.2 + 54265 0.67 0.845538
Target:  5'- -gGCgGCGGCGUCGGCgacCCuGGCACc- -3'
miRNA:   3'- caCG-UGCUGCAGCCGa--GGcUCGUGug -5'
8987 5' -57.8 NC_002512.2 + 54825 0.67 0.881859
Target:  5'- uGUGCACGuCGcacccgCGGaaccggCCGAGCGCGa -3'
miRNA:   3'- -CACGUGCuGCa-----GCCga----GGCUCGUGUg -5'
8987 5' -57.8 NC_002512.2 + 58965 0.67 0.881859
Target:  5'- -cGCGCGGCagcaUCGGCUCgaAGCGCAg -3'
miRNA:   3'- caCGUGCUGc---AGCCGAGgcUCGUGUg -5'
8987 5' -57.8 NC_002512.2 + 60103 0.66 0.918636
Target:  5'- -gGCACGACGaCGGUgugccugcucUgCGAGCugAUg -3'
miRNA:   3'- caCGUGCUGCaGCCG----------AgGCUCGugUG- -5'
8987 5' -57.8 NC_002512.2 + 60982 0.66 0.894978
Target:  5'- cUGCACGACGUC--UUCCGcgAGCACcCg -3'
miRNA:   3'- cACGUGCUGCAGccGAGGC--UCGUGuG- -5'
8987 5' -57.8 NC_002512.2 + 72926 0.77 0.355212
Target:  5'- aUGC-CGACGUCGGCgaacggCCGGGC-CACc -3'
miRNA:   3'- cACGuGCUGCAGCCGa-----GGCUCGuGUG- -5'
8987 5' -57.8 NC_002512.2 + 72981 0.66 0.91305
Target:  5'- cGUGCACGACGUguguacccaacaCGacCUCCugcgucugGAGUACACg -3'
miRNA:   3'- -CACGUGCUGCA------------GCc-GAGG--------CUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 73089 0.7 0.740799
Target:  5'- aGUGCACGACGUgcugguacaCGGCguggucgCCcgagacgcccgucGAGUACACg -3'
miRNA:   3'- -CACGUGCUGCA---------GCCGa------GG-------------CUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 74587 0.66 0.918087
Target:  5'- gGUGCuCGAggccggggcccucCGUCGGCUC-GAGC-CGCc -3'
miRNA:   3'- -CACGuGCU-------------GCAGCCGAGgCUCGuGUG- -5'
8987 5' -57.8 NC_002512.2 + 74701 0.66 0.901219
Target:  5'- -gGCGCGGUGUC--CUCCGAGCuCACg -3'
miRNA:   3'- caCGUGCUGCAGccGAGGCUCGuGUG- -5'
8987 5' -57.8 NC_002512.2 + 75737 0.67 0.881859
Target:  5'- -cGC-CGaACGggaGGCgaCCGAGCGCGCg -3'
miRNA:   3'- caCGuGC-UGCag-CCGa-GGCUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 82384 0.69 0.787343
Target:  5'- cUGCGgcCGGCGgUGGCUCCGcGCGCGg -3'
miRNA:   3'- cACGU--GCUGCaGCCGAGGCuCGUGUg -5'
8987 5' -57.8 NC_002512.2 + 83815 0.73 0.553683
Target:  5'- -cGCGcCGGCGgcggCGGCUCCGGGCccgggucgucgcagGCGCu -3'
miRNA:   3'- caCGU-GCUGCa---GCCGAGGCUCG--------------UGUG- -5'
8987 5' -57.8 NC_002512.2 + 84694 0.66 0.91305
Target:  5'- -aGCcCGGgGUCGaaCUCCGuGCGCGCg -3'
miRNA:   3'- caCGuGCUgCAGCc-GAGGCuCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 89004 0.66 0.918636
Target:  5'- -aGCGCgggGACGUCGGgcagcgcgaUCCGAGCGaacucCACg -3'
miRNA:   3'- caCGUG---CUGCAGCCg--------AGGCUCGU-----GUG- -5'
8987 5' -57.8 NC_002512.2 + 89414 0.67 0.858428
Target:  5'- -cGCGCGgaaccaggccucggGCGUCGGCggggucacgUCCGGGCcCAUg -3'
miRNA:   3'- caCGUGC--------------UGCAGCCG---------AGGCUCGuGUG- -5'
8987 5' -57.8 NC_002512.2 + 91673 0.68 0.808143
Target:  5'- -cGCGCGGacgucCGUCGGCcccgacgguaggaugUCCGcgauGCACACg -3'
miRNA:   3'- caCGUGCU-----GCAGCCG---------------AGGCu---CGUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.