miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8987 5' -57.8 NC_002512.2 + 132445 0.66 0.888524
Target:  5'- uUGCGCuccccGGCGgCGGgUCCGgggAGCGCGCg -3'
miRNA:   3'- cACGUG-----CUGCaGCCgAGGC---UCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 152459 0.66 0.888524
Target:  5'- -cGCGCGGCGUUgggaGGCgucCCGGGUccugugACGCg -3'
miRNA:   3'- caCGUGCUGCAG----CCGa--GGCUCG------UGUG- -5'
8987 5' -57.8 NC_002512.2 + 140886 0.66 0.886546
Target:  5'- cUGCcCGACGUCcccgcGCUCCGGGUcgacgacggggacgACGCg -3'
miRNA:   3'- cACGuGCUGCAGc----CGAGGCUCG--------------UGUG- -5'
8987 5' -57.8 NC_002512.2 + 3504 0.66 0.888524
Target:  5'- -gGCGcCGuCGUCGGCccuccacCCGAGCcCGCg -3'
miRNA:   3'- caCGU-GCuGCAGCCGa------GGCUCGuGUG- -5'
8987 5' -57.8 NC_002512.2 + 60982 0.66 0.894978
Target:  5'- cUGCACGACGUC--UUCCGcgAGCACcCg -3'
miRNA:   3'- cACGUGCUGCAGccGAGGC--UCGUGuG- -5'
8987 5' -57.8 NC_002512.2 + 136203 0.66 0.894978
Target:  5'- -cGCGuCGACGcCGGCggCCuGGUGCGCg -3'
miRNA:   3'- caCGU-GCUGCaGCCGa-GGcUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 84694 0.66 0.91305
Target:  5'- -aGCcCGGgGUCGaaCUCCGuGCGCGCg -3'
miRNA:   3'- caCGuGCUgCAGCc-GAGGCuCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 9222 0.66 0.91305
Target:  5'- -aGCACGACG-CGGCgggCCagguGGCGCucGCg -3'
miRNA:   3'- caCGUGCUGCaGCCGa--GGc---UCGUG--UG- -5'
8987 5' -57.8 NC_002512.2 + 182291 0.66 0.894978
Target:  5'- -cGUugGAUGUCGGUcaCCGcGUACAUa -3'
miRNA:   3'- caCGugCUGCAGCCGa-GGCuCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 41253 0.66 0.901219
Target:  5'- -cGC-CGGCGcccuugCGGC-CCGAGCGCuCg -3'
miRNA:   3'- caCGuGCUGCa-----GCCGaGGCUCGUGuG- -5'
8987 5' -57.8 NC_002512.2 + 218650 0.66 0.888524
Target:  5'- -cGCcCGGCGgacggaGGCggauacCCGGGCACACc -3'
miRNA:   3'- caCGuGCUGCag----CCGa-----GGCUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 23266 0.67 0.860647
Target:  5'- --uCACGACGUacgCGGCcuggUUCGAGUGCACg -3'
miRNA:   3'- cacGUGCUGCA---GCCG----AGGCUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 9646 0.67 0.845538
Target:  5'- -aGCACaccAUGUCGGCcaggCGGGCGCACu -3'
miRNA:   3'- caCGUGc--UGCAGCCGag--GCUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 133929 0.67 0.845538
Target:  5'- cUGUACGGCGgCGGC-CCGAcgGCcCGCg -3'
miRNA:   3'- cACGUGCUGCaGCCGaGGCU--CGuGUG- -5'
8987 5' -57.8 NC_002512.2 + 48511 0.67 0.867916
Target:  5'- -cGCACGACGacgcgCGGCUgCUGaAGCugAUc -3'
miRNA:   3'- caCGUGCUGCa----GCCGA-GGC-UCGugUG- -5'
8987 5' -57.8 NC_002512.2 + 137186 0.67 0.867916
Target:  5'- -cGUACGGCGUCGucGgUCCGcccggugggcGGCGCGCc -3'
miRNA:   3'- caCGUGCUGCAGC--CgAGGC----------UCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 5094 0.67 0.881859
Target:  5'- -cGC-CGGCGUCGGCg-CGGGCGgGa -3'
miRNA:   3'- caCGuGCUGCAGCCGagGCUCGUgUg -5'
8987 5' -57.8 NC_002512.2 + 54825 0.67 0.881859
Target:  5'- uGUGCACGuCGcacccgCGGaaccggCCGAGCGCGa -3'
miRNA:   3'- -CACGUGCuGCa-----GCCga----GGCUCGUGUg -5'
8987 5' -57.8 NC_002512.2 + 58965 0.67 0.881859
Target:  5'- -cGCGCGGCagcaUCGGCUCgaAGCGCAg -3'
miRNA:   3'- caCGUGCUGc---AGCCGAGgcUCGUGUg -5'
8987 5' -57.8 NC_002512.2 + 43403 0.67 0.867916
Target:  5'- aGUGgACGAacUCGGCgauccgccggCCGAGCAgCACg -3'
miRNA:   3'- -CACgUGCUgcAGCCGa---------GGCUCGU-GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.