miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8987 5' -57.8 NC_002512.2 + 211732 0.7 0.692936
Target:  5'- uGUGCcucggccuggcccGCGACG-CGGC-CCGGGCGCuGCg -3'
miRNA:   3'- -CACG-------------UGCUGCaGCCGaGGCUCGUG-UG- -5'
8987 5' -57.8 NC_002512.2 + 168409 0.7 0.707465
Target:  5'- gGUGCGCGAUGUCGauGCUcacccgguacaggucCCGGGC-CACc -3'
miRNA:   3'- -CACGUGCUGCAGC--CGA---------------GGCUCGuGUG- -5'
8987 5' -57.8 NC_002512.2 + 33257 0.7 0.71324
Target:  5'- --aCACGGCGUCGGCcacCCGGGCGaACc -3'
miRNA:   3'- cacGUGCUGCAGCCGa--GGCUCGUgUG- -5'
8987 5' -57.8 NC_002512.2 + 36377 0.7 0.71324
Target:  5'- aGUGCACcguGACGUUGGCgcgaCCGAGguCGu -3'
miRNA:   3'- -CACGUG---CUGCAGCCGa---GGCUCguGUg -5'
8987 5' -57.8 NC_002512.2 + 126016 0.7 0.71324
Target:  5'- uUGCACGcguuCGUCaggcccaGCUCCGGGUGCACc -3'
miRNA:   3'- cACGUGCu---GCAGc------CGAGGCUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 156969 0.7 0.722815
Target:  5'- -cGC-CGACGUCGGCaUCCuGGGCAa-- -3'
miRNA:   3'- caCGuGCUGCAGCCG-AGG-CUCGUgug -5'
8987 5' -57.8 NC_002512.2 + 73089 0.7 0.740799
Target:  5'- aGUGCACGACGUgcugguacaCGGCguggucgCCcgagacgcccgucGAGUACACg -3'
miRNA:   3'- -CACGUGCUGCA---------GCCGa------GG-------------CUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 91896 0.7 0.741737
Target:  5'- -gGCGCGGCGcaCGGC-CCGcucgggcccGGCACGCa -3'
miRNA:   3'- caCGUGCUGCa-GCCGaGGC---------UCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 116116 0.7 0.741737
Target:  5'- cGUGCcCGagaucgacgacuGCGUCGGCUCCauGAccGCGCACc -3'
miRNA:   3'- -CACGuGC------------UGCAGCCGAGG--CU--CGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 112918 0.7 0.741737
Target:  5'- -gGaCGgGGCGUCGGCggcCCGguGGCGCGCg -3'
miRNA:   3'- caC-GUgCUGCAGCCGa--GGC--UCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 160748 0.7 0.741737
Target:  5'- ---aACGGCGcCGGCcCCGGGCACGg -3'
miRNA:   3'- cacgUGCUGCaGCCGaGGCUCGUGUg -5'
8987 5' -57.8 NC_002512.2 + 50018 0.69 0.751069
Target:  5'- gGUGCACGuCGUCGuGaCggUGGGCGCGCa -3'
miRNA:   3'- -CACGUGCuGCAGC-C-GagGCUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 110719 0.69 0.751069
Target:  5'- cUGCAUGGCGUUGGCcagggCCGuguuguGCAgGCg -3'
miRNA:   3'- cACGUGCUGCAGCCGa----GGCu-----CGUgUG- -5'
8987 5' -57.8 NC_002512.2 + 194406 0.69 0.751069
Target:  5'- -gGC-CGACGUCGuCUUCGAGUACGa -3'
miRNA:   3'- caCGuGCUGCAGCcGAGGCUCGUGUg -5'
8987 5' -57.8 NC_002512.2 + 124264 0.69 0.751069
Target:  5'- gGUGCacccgacgGCGGCGUCGGaC-CCGGGCGUGCg -3'
miRNA:   3'- -CACG--------UGCUGCAGCC-GaGGCUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 103629 0.69 0.769433
Target:  5'- -cGCugGAgGUCGGCUUCGGaCACcCg -3'
miRNA:   3'- caCGugCUgCAGCCGAGGCUcGUGuG- -5'
8987 5' -57.8 NC_002512.2 + 26730 0.69 0.769433
Target:  5'- uGUGCGCGuCGcCGGCgCCGcuGUACGCc -3'
miRNA:   3'- -CACGUGCuGCaGCCGaGGCu-CGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 123984 0.69 0.777553
Target:  5'- cGUGUACGACGaCGGCgagcccaCCGGGUgggagacggacccGCGCg -3'
miRNA:   3'- -CACGUGCUGCaGCCGa------GGCUCG-------------UGUG- -5'
8987 5' -57.8 NC_002512.2 + 203207 0.69 0.778449
Target:  5'- -aGCACGGCGUaCGucugccGCUUCGAGCcCGCc -3'
miRNA:   3'- caCGUGCUGCA-GC------CGAGGCUCGuGUG- -5'
8987 5' -57.8 NC_002512.2 + 155174 0.69 0.778449
Target:  5'- -cGCucGCGGCGUCGugaGCUCgGAGgACACc -3'
miRNA:   3'- caCG--UGCUGCAGC---CGAGgCUCgUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.