miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8987 5' -57.8 NC_002512.2 + 190274 1.08 0.003601
Target:  5'- gGUGCACGACGUCGGCUCCGAGCACACc -3'
miRNA:   3'- -CACGUGCUGCAGCCGAGGCUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 114780 0.79 0.266293
Target:  5'- cUGCGCGAUGUUGGC-CCGcuGCACGCg -3'
miRNA:   3'- cACGUGCUGCAGCCGaGGCu-CGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 72926 0.77 0.355212
Target:  5'- aUGC-CGACGUCGGCgaacggCCGGGC-CACc -3'
miRNA:   3'- cACGuGCUGCAGCCGa-----GGCUCGuGUG- -5'
8987 5' -57.8 NC_002512.2 + 11019 0.76 0.370618
Target:  5'- -cGCACGGCGUCGGUgccCCGGGCGa-- -3'
miRNA:   3'- caCGUGCUGCAGCCGa--GGCUCGUgug -5'
8987 5' -57.8 NC_002512.2 + 124618 0.76 0.401947
Target:  5'- -cGUcgGCGGCGUCGGCgccuggaUCCGGGUGCGCg -3'
miRNA:   3'- caCG--UGCUGCAGCCG-------AGGCUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 117396 0.76 0.414436
Target:  5'- cGUGCACGgcaucgaggaccaggGCGUCauccGCUCCGAGCGCGa -3'
miRNA:   3'- -CACGUGC---------------UGCAGc---CGAGGCUCGUGUg -5'
8987 5' -57.8 NC_002512.2 + 211688 0.73 0.537342
Target:  5'- cGUGCGCGACGUgaugCGGCacgagGAGCGCGCc -3'
miRNA:   3'- -CACGUGCUGCA----GCCGagg--CUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 83815 0.73 0.553683
Target:  5'- -cGCGcCGGCGgcggCGGCUCCGGGCccgggucgucgcagGCGCu -3'
miRNA:   3'- caCGU-GCUGCa---GCCGAGGCUCG--------------UGUG- -5'
8987 5' -57.8 NC_002512.2 + 156531 0.73 0.556583
Target:  5'- uGUGUuccuGCGACGcCGGUUCgGAGCGCGu -3'
miRNA:   3'- -CACG----UGCUGCaGCCGAGgCUCGUGUg -5'
8987 5' -57.8 NC_002512.2 + 107006 0.73 0.566278
Target:  5'- -gGC-CGGgGUCGGCcgagagCCGGGCGCGCu -3'
miRNA:   3'- caCGuGCUgCAGCCGa-----GGCUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 137141 0.73 0.576017
Target:  5'- -cGCcCGuCGUCGGCgccaucggaCCGAGCGCGCc -3'
miRNA:   3'- caCGuGCuGCAGCCGa--------GGCUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 146439 0.72 0.585793
Target:  5'- -cGCACGACuUCG--UCCGGGCGCACu -3'
miRNA:   3'- caCGUGCUGcAGCcgAGGCUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 138367 0.72 0.605431
Target:  5'- --cCAgGACcagCGGCUCCGAGUGCACg -3'
miRNA:   3'- cacGUgCUGca-GCCGAGGCUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 211298 0.72 0.615281
Target:  5'- -aGUGCGGCaugCGGCggUCCGAGCGCAUc -3'
miRNA:   3'- caCGUGCUGca-GCCG--AGGCUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 111334 0.72 0.625143
Target:  5'- aUGC-CGuuGUUGGCgucCCGGGCGCGCa -3'
miRNA:   3'- cACGuGCugCAGCCGa--GGCUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 23235 0.71 0.644875
Target:  5'- -cGCACGGCGaUCGGCgaacaCGGGCAgAUg -3'
miRNA:   3'- caCGUGCUGC-AGCCGag---GCUCGUgUG- -5'
8987 5' -57.8 NC_002512.2 + 29887 0.71 0.65473
Target:  5'- gGUGCACGugGgccGCUcguccccgCCGGGCGCGCg -3'
miRNA:   3'- -CACGUGCugCagcCGA--------GGCUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 43477 0.71 0.664569
Target:  5'- -aGCACGGCGU-GGaagCCGAGgACGCg -3'
miRNA:   3'- caCGUGCUGCAgCCga-GGCUCgUGUG- -5'
8987 5' -57.8 NC_002512.2 + 127002 0.71 0.674383
Target:  5'- -cGCACGGuggaGUCGG-UCCGGGCGCGu -3'
miRNA:   3'- caCGUGCUg---CAGCCgAGGCUCGUGUg -5'
8987 5' -57.8 NC_002512.2 + 169005 0.71 0.684166
Target:  5'- -cGCGCGcCGgcUCGGCgaUCCGGGCGgGCg -3'
miRNA:   3'- caCGUGCuGC--AGCCG--AGGCUCGUgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.