miRNA display CGI


Results 1 - 20 of 123 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8987 5' -57.8 NC_002512.2 + 123984 0.69 0.777553
Target:  5'- cGUGUACGACGaCGGCgagcccaCCGGGUgggagacggacccGCGCg -3'
miRNA:   3'- -CACGUGCUGCaGCCGa------GGCUCG-------------UGUG- -5'
8987 5' -57.8 NC_002512.2 + 127002 0.71 0.674383
Target:  5'- -cGCACGGuggaGUCGG-UCCGGGCGCGu -3'
miRNA:   3'- caCGUGCUg---CAGCCgAGGCUCGUGUg -5'
8987 5' -57.8 NC_002512.2 + 36377 0.7 0.71324
Target:  5'- aGUGCACcguGACGUUGGCgcgaCCGAGguCGu -3'
miRNA:   3'- -CACGUG---CUGCAGCCGa---GGCUCguGUg -5'
8987 5' -57.8 NC_002512.2 + 126016 0.7 0.71324
Target:  5'- uUGCACGcguuCGUCaggcccaGCUCCGGGUGCACc -3'
miRNA:   3'- cACGUGCu---GCAGc------CGAGGCUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 33257 0.7 0.71324
Target:  5'- --aCACGGCGUCGGCcacCCGGGCGaACc -3'
miRNA:   3'- cacGUGCUGCAGCCGa--GGCUCGUgUG- -5'
8987 5' -57.8 NC_002512.2 + 73089 0.7 0.740799
Target:  5'- aGUGCACGACGUgcugguacaCGGCguggucgCCcgagacgcccgucGAGUACACg -3'
miRNA:   3'- -CACGUGCUGCA---------GCCGa------GG-------------CUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 116116 0.7 0.741737
Target:  5'- cGUGCcCGagaucgacgacuGCGUCGGCUCCauGAccGCGCACc -3'
miRNA:   3'- -CACGuGC------------UGCAGCCGAGG--CU--CGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 50018 0.69 0.751069
Target:  5'- gGUGCACGuCGUCGuGaCggUGGGCGCGCa -3'
miRNA:   3'- -CACGUGCuGCAGC-C-GagGCUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 26730 0.69 0.769433
Target:  5'- uGUGCGCGuCGcCGGCgCCGcuGUACGCc -3'
miRNA:   3'- -CACGUGCuGCaGCCGaGGCu-CGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 43477 0.71 0.664569
Target:  5'- -aGCACGGCGU-GGaagCCGAGgACGCg -3'
miRNA:   3'- caCGUGCUGCAgCCga-GGCUCgUGUG- -5'
8987 5' -57.8 NC_002512.2 + 29887 0.71 0.65473
Target:  5'- gGUGCACGugGgccGCUcguccccgCCGGGCGCGCg -3'
miRNA:   3'- -CACGUGCugCagcCGA--------GGCUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 23235 0.71 0.644875
Target:  5'- -cGCACGGCGaUCGGCgaacaCGGGCAgAUg -3'
miRNA:   3'- caCGUGCUGC-AGCCGag---GCUCGUgUG- -5'
8987 5' -57.8 NC_002512.2 + 72926 0.77 0.355212
Target:  5'- aUGC-CGACGUCGGCgaacggCCGGGC-CACc -3'
miRNA:   3'- cACGuGCUGCAGCCGa-----GGCUCGuGUG- -5'
8987 5' -57.8 NC_002512.2 + 11019 0.76 0.370618
Target:  5'- -cGCACGGCGUCGGUgccCCGGGCGa-- -3'
miRNA:   3'- caCGUGCUGCAGCCGa--GGCUCGUgug -5'
8987 5' -57.8 NC_002512.2 + 124618 0.76 0.401947
Target:  5'- -cGUcgGCGGCGUCGGCgccuggaUCCGGGUGCGCg -3'
miRNA:   3'- caCG--UGCUGCAGCCG-------AGGCUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 117396 0.76 0.414436
Target:  5'- cGUGCACGgcaucgaggaccaggGCGUCauccGCUCCGAGCGCGa -3'
miRNA:   3'- -CACGUGC---------------UGCAGc---CGAGGCUCGUGUg -5'
8987 5' -57.8 NC_002512.2 + 83815 0.73 0.553683
Target:  5'- -cGCGcCGGCGgcggCGGCUCCGGGCccgggucgucgcagGCGCu -3'
miRNA:   3'- caCGU-GCUGCa---GCCGAGGCUCG--------------UGUG- -5'
8987 5' -57.8 NC_002512.2 + 156531 0.73 0.556583
Target:  5'- uGUGUuccuGCGACGcCGGUUCgGAGCGCGu -3'
miRNA:   3'- -CACG----UGCUGCaGCCGAGgCUCGUGUg -5'
8987 5' -57.8 NC_002512.2 + 137141 0.73 0.576017
Target:  5'- -cGCcCGuCGUCGGCgccaucggaCCGAGCGCGCc -3'
miRNA:   3'- caCGuGCuGCAGCCGa--------GGCUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 138367 0.72 0.605431
Target:  5'- --cCAgGACcagCGGCUCCGAGUGCACg -3'
miRNA:   3'- cacGUgCUGca-GCCGAGGCUCGUGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.