miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8987 5' -57.8 NC_002512.2 + 56 0.68 0.813214
Target:  5'- -gGCuuuGCGGCGUCGGUcgCGGGCGCGa -3'
miRNA:   3'- caCG---UGCUGCAGCCGagGCUCGUGUg -5'
8987 5' -57.8 NC_002512.2 + 152 0.68 0.837711
Target:  5'- -gGCGgGGCGcCGGCggagGAGCGCGCg -3'
miRNA:   3'- caCGUgCUGCaGCCGagg-CUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 3504 0.66 0.888524
Target:  5'- -gGCGcCGuCGUCGGCccuccacCCGAGCcCGCg -3'
miRNA:   3'- caCGU-GCuGCAGCCGa------GGCUCGuGUG- -5'
8987 5' -57.8 NC_002512.2 + 5094 0.67 0.881859
Target:  5'- -cGC-CGGCGUCGGCg-CGGGCGgGa -3'
miRNA:   3'- caCGuGCUGCAGCCGagGCUCGUgUg -5'
8987 5' -57.8 NC_002512.2 + 9222 0.66 0.91305
Target:  5'- -aGCACGACG-CGGCgggCCagguGGCGCucGCg -3'
miRNA:   3'- caCGUGCUGCaGCCGa--GGc---UCGUG--UG- -5'
8987 5' -57.8 NC_002512.2 + 9646 0.67 0.845538
Target:  5'- -aGCACaccAUGUCGGCcaggCGGGCGCACu -3'
miRNA:   3'- caCGUGc--UGCAGCCGag--GCUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 10762 0.69 0.787343
Target:  5'- -aGCGCGuCGUCGGCcccgCCGcGGUAgGCg -3'
miRNA:   3'- caCGUGCuGCAGCCGa---GGC-UCGUgUG- -5'
8987 5' -57.8 NC_002512.2 + 11019 0.76 0.370618
Target:  5'- -cGCACGGCGUCGGUgccCCGGGCGa-- -3'
miRNA:   3'- caCGUGCUGCAGCCGa--GGCUCGUgug -5'
8987 5' -57.8 NC_002512.2 + 14531 0.68 0.813214
Target:  5'- -cGCGCGACGgagucgaCGGagCCGGGCACGa -3'
miRNA:   3'- caCGUGCUGCa------GCCgaGGCUCGUGUg -5'
8987 5' -57.8 NC_002512.2 + 23235 0.71 0.644875
Target:  5'- -cGCACGGCGaUCGGCgaacaCGGGCAgAUg -3'
miRNA:   3'- caCGUGCUGC-AGCCGag---GCUCGUgUG- -5'
8987 5' -57.8 NC_002512.2 + 23266 0.67 0.860647
Target:  5'- --uCACGACGUacgCGGCcuggUUCGAGUGCACg -3'
miRNA:   3'- cacGUGCUGCA---GCCG----AGGCUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 26592 0.68 0.804733
Target:  5'- cGUGCACGGC--CGGCUUCGc-CACGCu -3'
miRNA:   3'- -CACGUGCUGcaGCCGAGGCucGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 26730 0.69 0.769433
Target:  5'- uGUGCGCGuCGcCGGCgCCGcuGUACGCc -3'
miRNA:   3'- -CACGUGCuGCaGCCGaGGCu-CGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 29887 0.71 0.65473
Target:  5'- gGUGCACGugGgccGCUcguccccgCCGGGCGCGCg -3'
miRNA:   3'- -CACGUGCugCagcCGA--------GGCUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 33257 0.7 0.71324
Target:  5'- --aCACGGCGUCGGCcacCCGGGCGaACc -3'
miRNA:   3'- cacGUGCUGCAGCCGa--GGCUCGUgUG- -5'
8987 5' -57.8 NC_002512.2 + 36377 0.7 0.71324
Target:  5'- aGUGCACcguGACGUUGGCgcgaCCGAGguCGu -3'
miRNA:   3'- -CACGUG---CUGCAGCCGa---GGCUCguGUg -5'
8987 5' -57.8 NC_002512.2 + 41253 0.66 0.901219
Target:  5'- -cGC-CGGCGcccuugCGGC-CCGAGCGCuCg -3'
miRNA:   3'- caCGuGCUGCa-----GCCGaGGCUCGUGuG- -5'
8987 5' -57.8 NC_002512.2 + 43403 0.67 0.867916
Target:  5'- aGUGgACGAacUCGGCgauccgccggCCGAGCAgCACg -3'
miRNA:   3'- -CACgUGCUgcAGCCGa---------GGCUCGU-GUG- -5'
8987 5' -57.8 NC_002512.2 + 43477 0.71 0.664569
Target:  5'- -aGCACGGCGU-GGaagCCGAGgACGCg -3'
miRNA:   3'- caCGUGCUGCAgCCga-GGCUCgUGUG- -5'
8987 5' -57.8 NC_002512.2 + 47449 0.66 0.918636
Target:  5'- -cGCACGGCGgaGGCcgaggCCGAGUucCGCa -3'
miRNA:   3'- caCGUGCUGCagCCGa----GGCUCGu-GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.