miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8987 5' -57.8 NC_002512.2 + 84694 0.66 0.91305
Target:  5'- -aGCcCGGgGUCGaaCUCCGuGCGCGCg -3'
miRNA:   3'- caCGuGCUgCAGCc-GAGGCuCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 74701 0.66 0.901219
Target:  5'- -gGCGCGGUGUC--CUCCGAGCuCACg -3'
miRNA:   3'- caCGUGCUGCAGccGAGGCUCGuGUG- -5'
8987 5' -57.8 NC_002512.2 + 140886 0.66 0.886546
Target:  5'- cUGCcCGACGUCcccgcGCUCCGGGUcgacgacggggacgACGCg -3'
miRNA:   3'- cACGuGCUGCAGc----CGAGGCUCG--------------UGUG- -5'
8987 5' -57.8 NC_002512.2 + 154718 0.66 0.91305
Target:  5'- -gGCGCGACGgaaCGGCguugcgUCCGcGGC-CGCg -3'
miRNA:   3'- caCGUGCUGCa--GCCG------AGGC-UCGuGUG- -5'
8987 5' -57.8 NC_002512.2 + 60103 0.66 0.918636
Target:  5'- -gGCACGACGaCGGUgugccugcucUgCGAGCugAUg -3'
miRNA:   3'- caCGUGCUGCaGCCG----------AgGCUCGugUG- -5'
8987 5' -57.8 NC_002512.2 + 170377 0.66 0.918636
Target:  5'- cGUGCGCGGCGcCGcGCugcacuUCUG-GCACAg -3'
miRNA:   3'- -CACGUGCUGCaGC-CG------AGGCuCGUGUg -5'
8987 5' -57.8 NC_002512.2 + 3504 0.66 0.888524
Target:  5'- -gGCGcCGuCGUCGGCccuccacCCGAGCcCGCg -3'
miRNA:   3'- caCGU-GCuGCAGCCGa------GGCUCGuGUG- -5'
8987 5' -57.8 NC_002512.2 + 89004 0.66 0.918636
Target:  5'- -aGCGCgggGACGUCGGgcagcgcgaUCCGAGCGaacucCACg -3'
miRNA:   3'- caCGUG---CUGCAGCCg--------AGGCUCGU-----GUG- -5'
8987 5' -57.8 NC_002512.2 + 74587 0.66 0.918087
Target:  5'- gGUGCuCGAggccggggcccucCGUCGGCUC-GAGC-CGCc -3'
miRNA:   3'- -CACGuGCU-------------GCAGCCGAGgCUCGuGUG- -5'
8987 5' -57.8 NC_002512.2 + 136203 0.66 0.894978
Target:  5'- -cGCGuCGACGcCGGCggCCuGGUGCGCg -3'
miRNA:   3'- caCGU-GCUGCaGCCGa-GGcUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 92657 0.66 0.918636
Target:  5'- -cGCGCGGaucCGggaCGGCcgcccgcgCCGGGCGCGCc -3'
miRNA:   3'- caCGUGCU---GCa--GCCGa-------GGCUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 47449 0.66 0.918636
Target:  5'- -cGCACGGCGgaGGCcgaggCCGAGUucCGCa -3'
miRNA:   3'- caCGUGCUGCagCCGa----GGCUCGu-GUG- -5'
8987 5' -57.8 NC_002512.2 + 53745 0.66 0.91305
Target:  5'- cUGCGCGACGUCcGCggaUCGAG-AUACg -3'
miRNA:   3'- cACGUGCUGCAGcCGa--GGCUCgUGUG- -5'
8987 5' -57.8 NC_002512.2 + 155267 0.66 0.91305
Target:  5'- -cGCGCGGCGgucUCGcGCUCCGcuccGGUcCGCg -3'
miRNA:   3'- caCGUGCUGC---AGC-CGAGGC----UCGuGUG- -5'
8987 5' -57.8 NC_002512.2 + 9222 0.66 0.91305
Target:  5'- -aGCACGACG-CGGCgggCCagguGGCGCucGCg -3'
miRNA:   3'- caCGUGCUGCaGCCGa--GGc---UCGUG--UG- -5'
8987 5' -57.8 NC_002512.2 + 182291 0.66 0.894978
Target:  5'- -cGUugGAUGUCGGUcaCCGcGUACAUa -3'
miRNA:   3'- caCGugCUGCAGCCGa-GGCuCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 60982 0.66 0.894978
Target:  5'- cUGCACGACGUC--UUCCGcgAGCACcCg -3'
miRNA:   3'- cACGUGCUGCAGccGAGGC--UCGUGuG- -5'
8987 5' -57.8 NC_002512.2 + 41253 0.66 0.901219
Target:  5'- -cGC-CGGCGcccuugCGGC-CCGAGCGCuCg -3'
miRNA:   3'- caCGuGCUGCa-----GCCGaGGCUCGUGuG- -5'
8987 5' -57.8 NC_002512.2 + 152459 0.66 0.888524
Target:  5'- -cGCGCGGCGUUgggaGGCgucCCGGGUccugugACGCg -3'
miRNA:   3'- caCGUGCUGCAG----CCGa--GGCUCG------UGUG- -5'
8987 5' -57.8 NC_002512.2 + 167121 0.66 0.91305
Target:  5'- cUGCaACGACGUCgaguuccuGGuCUCCGAGguCGg -3'
miRNA:   3'- cACG-UGCUGCAG--------CC-GAGGCUCguGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.