miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8987 5' -57.8 NC_002512.2 + 170377 0.66 0.918636
Target:  5'- cGUGCGCGGCGcCGcGCugcacuUCUG-GCACAg -3'
miRNA:   3'- -CACGUGCUGCaGC-CG------AGGCuCGUGUg -5'
8987 5' -57.8 NC_002512.2 + 181384 0.66 0.885883
Target:  5'- -cGCGCGuCGUCGuGCgcccuggccuccgCCGGGgACGCg -3'
miRNA:   3'- caCGUGCuGCAGC-CGa------------GGCUCgUGUG- -5'
8987 5' -57.8 NC_002512.2 + 189563 0.67 0.881859
Target:  5'- -gGUGCGACGUCuGCUuccgaCCGGGC-CGCc -3'
miRNA:   3'- caCGUGCUGCAGcCGA-----GGCUCGuGUG- -5'
8987 5' -57.8 NC_002512.2 + 190274 1.08 0.003601
Target:  5'- gGUGCACGACGUCGGCUCCGAGCACACc -3'
miRNA:   3'- -CACGUGCUGCAGCCGAGGCUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 155267 0.66 0.91305
Target:  5'- -cGCGCGGCGgucUCGcGCUCCGcuccGGUcCGCg -3'
miRNA:   3'- caCGUGCUGC---AGC-CGAGGC----UCGuGUG- -5'
8987 5' -57.8 NC_002512.2 + 154718 0.66 0.91305
Target:  5'- -gGCGCGACGgaaCGGCguugcgUCCGcGGC-CGCg -3'
miRNA:   3'- caCGUGCUGCa--GCCG------AGGC-UCGuGUG- -5'
8987 5' -57.8 NC_002512.2 + 146957 0.66 0.91305
Target:  5'- -aGCGCGACGaCGGCggccgcggCCGAGacuucCGCu -3'
miRNA:   3'- caCGUGCUGCaGCCGa-------GGCUCgu---GUG- -5'
8987 5' -57.8 NC_002512.2 + 72981 0.66 0.91305
Target:  5'- cGUGCACGACGUguguacccaacaCGacCUCCugcgucugGAGUACACg -3'
miRNA:   3'- -CACGUGCUGCA------------GCc-GAGG--------CUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 158242 0.66 0.907244
Target:  5'- -aGUuCGGC-UCGGUggCCGAGUACACc -3'
miRNA:   3'- caCGuGCUGcAGCCGa-GGCUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 218650 0.66 0.888524
Target:  5'- -cGCcCGGCGgacggaGGCggauacCCGGGCACACc -3'
miRNA:   3'- caCGuGCUGCag----CCGa-----GGCUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 152336 0.66 0.901219
Target:  5'- gGUGguCAUGACGacaccgCGGacCUCCGAGCACGg -3'
miRNA:   3'- -CAC--GUGCUGCa-----GCC--GAGGCUCGUGUg -5'
8987 5' -57.8 NC_002512.2 + 132747 0.66 0.907244
Target:  5'- -aGCGCGGCGUCGuC-CCGcaGGCGgGCg -3'
miRNA:   3'- caCGUGCUGCAGCcGaGGC--UCGUgUG- -5'
8987 5' -57.8 NC_002512.2 + 92657 0.66 0.918636
Target:  5'- -cGCGCGGaucCGggaCGGCcgcccgcgCCGGGCGCGCc -3'
miRNA:   3'- caCGUGCU---GCa--GCCGa-------GGCUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 188851 0.66 0.894978
Target:  5'- -aGCgACGA-GUCGGUcaccUUCGAGUACACc -3'
miRNA:   3'- caCG-UGCUgCAGCCG----AGGCUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 89004 0.66 0.918636
Target:  5'- -aGCGCgggGACGUCGGgcagcgcgaUCCGAGCGaacucCACg -3'
miRNA:   3'- caCGUG---CUGCAGCCg--------AGGCUCGU-----GUG- -5'
8987 5' -57.8 NC_002512.2 + 206274 0.66 0.907244
Target:  5'- cUGCACGuCGUaCGGC---GAGUACACg -3'
miRNA:   3'- cACGUGCuGCA-GCCGaggCUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 132445 0.66 0.888524
Target:  5'- uUGCGCuccccGGCGgCGGgUCCGgggAGCGCGCg -3'
miRNA:   3'- cACGUG-----CUGCaGCCgAGGC---UCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 215350 0.67 0.881859
Target:  5'- cGUGCcCGGCuccGUCGaCUCCGucGCGCGCu -3'
miRNA:   3'- -CACGuGCUG---CAGCcGAGGCu-CGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 74587 0.66 0.918087
Target:  5'- gGUGCuCGAggccggggcccucCGUCGGCUC-GAGC-CGCc -3'
miRNA:   3'- -CACGuGCU-------------GCAGCCGAGgCUCGuGUG- -5'
8987 5' -57.8 NC_002512.2 + 167121 0.66 0.91305
Target:  5'- cUGCaACGACGUCgaguuccuGGuCUCCGAGguCGg -3'
miRNA:   3'- cACG-UGCUGCAG--------CC-GAGGCUCguGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.