miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8987 5' -57.8 NC_002512.2 + 152336 0.66 0.901219
Target:  5'- gGUGguCAUGACGacaccgCGGacCUCCGAGCACGg -3'
miRNA:   3'- -CAC--GUGCUGCa-----GCC--GAGGCUCGUGUg -5'
8987 5' -57.8 NC_002512.2 + 182291 0.66 0.894978
Target:  5'- -cGUugGAUGUCGGUcaCCGcGUACAUa -3'
miRNA:   3'- caCGugCUGCAGCCGa-GGCuCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 188851 0.66 0.894978
Target:  5'- -aGCgACGA-GUCGGUcaccUUCGAGUACACc -3'
miRNA:   3'- caCG-UGCUgCAGCCG----AGGCUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 136203 0.66 0.894978
Target:  5'- -cGCGuCGACGcCGGCggCCuGGUGCGCg -3'
miRNA:   3'- caCGU-GCUGCaGCCGa-GGcUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 60982 0.66 0.894978
Target:  5'- cUGCACGACGUC--UUCCGcgAGCACcCg -3'
miRNA:   3'- cACGUGCUGCAGccGAGGC--UCGUGuG- -5'
8987 5' -57.8 NC_002512.2 + 132445 0.66 0.888524
Target:  5'- uUGCGCuccccGGCGgCGGgUCCGgggAGCGCGCg -3'
miRNA:   3'- cACGUG-----CUGCaGCCgAGGC---UCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 218650 0.66 0.888524
Target:  5'- -cGCcCGGCGgacggaGGCggauacCCGGGCACACc -3'
miRNA:   3'- caCGuGCUGCag----CCGa-----GGCUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 152459 0.66 0.888524
Target:  5'- -cGCGCGGCGUUgggaGGCgucCCGGGUccugugACGCg -3'
miRNA:   3'- caCGUGCUGCAG----CCGa--GGCUCG------UGUG- -5'
8987 5' -57.8 NC_002512.2 + 3504 0.66 0.888524
Target:  5'- -gGCGcCGuCGUCGGCccuccacCCGAGCcCGCg -3'
miRNA:   3'- caCGU-GCuGCAGCCGa------GGCUCGuGUG- -5'
8987 5' -57.8 NC_002512.2 + 140886 0.66 0.886546
Target:  5'- cUGCcCGACGUCcccgcGCUCCGGGUcgacgacggggacgACGCg -3'
miRNA:   3'- cACGuGCUGCAGc----CGAGGCUCG--------------UGUG- -5'
8987 5' -57.8 NC_002512.2 + 181384 0.66 0.885883
Target:  5'- -cGCGCGuCGUCGuGCgcccuggccuccgCCGGGgACGCg -3'
miRNA:   3'- caCGUGCuGCAGC-CGa------------GGCUCgUGUG- -5'
8987 5' -57.8 NC_002512.2 + 215350 0.67 0.881859
Target:  5'- cGUGCcCGGCuccGUCGaCUCCGucGCGCGCu -3'
miRNA:   3'- -CACGuGCUG---CAGCcGAGGCu-CGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 54825 0.67 0.881859
Target:  5'- uGUGCACGuCGcacccgCGGaaccggCCGAGCGCGa -3'
miRNA:   3'- -CACGUGCuGCa-----GCCga----GGCUCGUGUg -5'
8987 5' -57.8 NC_002512.2 + 75737 0.67 0.881859
Target:  5'- -cGC-CGaACGggaGGCgaCCGAGCGCGCg -3'
miRNA:   3'- caCGuGC-UGCag-CCGa-GGCUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 58965 0.67 0.881859
Target:  5'- -cGCGCGGCagcaUCGGCUCgaAGCGCAg -3'
miRNA:   3'- caCGUGCUGc---AGCCGAGgcUCGUGUg -5'
8987 5' -57.8 NC_002512.2 + 5094 0.67 0.881859
Target:  5'- -cGC-CGGCGUCGGCg-CGGGCGgGa -3'
miRNA:   3'- caCGuGCUGCAGCCGagGCUCGUgUg -5'
8987 5' -57.8 NC_002512.2 + 189563 0.67 0.881859
Target:  5'- -gGUGCGACGUCuGCUuccgaCCGGGC-CGCc -3'
miRNA:   3'- caCGUGCUGCAGcCGA-----GGCUCGuGUG- -5'
8987 5' -57.8 NC_002512.2 + 124682 0.67 0.874989
Target:  5'- -aGaCGgGACcUCGGgaUCCGGGCGCACg -3'
miRNA:   3'- caC-GUgCUGcAGCCg-AGGCUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 199617 0.67 0.874989
Target:  5'- --cCAUGGCGcCGGCUCCGcGCGucCGCg -3'
miRNA:   3'- cacGUGCUGCaGCCGAGGCuCGU--GUG- -5'
8987 5' -57.8 NC_002512.2 + 215142 0.67 0.874989
Target:  5'- -cGCGCGACGggggaGGCgaCGAGCACc- -3'
miRNA:   3'- caCGUGCUGCag---CCGagGCUCGUGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.