miRNA display CGI


Results 41 - 60 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8987 5' -57.8 NC_002512.2 + 137320 0.67 0.87429
Target:  5'- -gGcCGCGGCGUCGGCgccUCCGAcgucgucGC-CGCg -3'
miRNA:   3'- caC-GUGCUGCAGCCG---AGGCU-------CGuGUG- -5'
8987 5' -57.8 NC_002512.2 + 48511 0.67 0.867916
Target:  5'- -cGCACGACGacgcgCGGCUgCUGaAGCugAUc -3'
miRNA:   3'- caCGUGCUGCa----GCCGA-GGC-UCGugUG- -5'
8987 5' -57.8 NC_002512.2 + 137186 0.67 0.867916
Target:  5'- -cGUACGGCGUCGucGgUCCGcccggugggcGGCGCGCc -3'
miRNA:   3'- caCGUGCUGCAGC--CgAGGC----------UCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 91853 0.67 0.867916
Target:  5'- -cGCAgGAUGUCGGCUCgGAagucggauccGUACGu -3'
miRNA:   3'- caCGUgCUGCAGCCGAGgCU----------CGUGUg -5'
8987 5' -57.8 NC_002512.2 + 226596 0.67 0.867916
Target:  5'- -gGCAuCGugGgCGGCUCUGGGCGa-- -3'
miRNA:   3'- caCGU-GCugCaGCCGAGGCUCGUgug -5'
8987 5' -57.8 NC_002512.2 + 43403 0.67 0.867916
Target:  5'- aGUGgACGAacUCGGCgauccgccggCCGAGCAgCACg -3'
miRNA:   3'- -CACgUGCUgcAGCCGa---------GGCUCGU-GUG- -5'
8987 5' -57.8 NC_002512.2 + 176913 0.67 0.867198
Target:  5'- -cGCuCGaACGUCucguucaGGCUCCG-GCGCGCc -3'
miRNA:   3'- caCGuGC-UGCAG-------CCGAGGCuCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 154678 0.67 0.860647
Target:  5'- -cGgGCGAcCGUCcGCUCCGAGCGg-- -3'
miRNA:   3'- caCgUGCU-GCAGcCGAGGCUCGUgug -5'
8987 5' -57.8 NC_002512.2 + 23266 0.67 0.860647
Target:  5'- --uCACGACGUacgCGGCcuggUUCGAGUGCACg -3'
miRNA:   3'- cacGUGCUGCA---GCCG----AGGCUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 89414 0.67 0.858428
Target:  5'- -cGCGCGgaaccaggccucggGCGUCGGCggggucacgUCCGGGCcCAUg -3'
miRNA:   3'- caCGUGC--------------UGCAGCCG---------AGGCUCGuGUG- -5'
8987 5' -57.8 NC_002512.2 + 123650 0.67 0.853186
Target:  5'- -aGCGCGcCG-CGGUUCCcGcGCGCGCg -3'
miRNA:   3'- caCGUGCuGCaGCCGAGG-CuCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 156200 0.67 0.853186
Target:  5'- aUGgACGuCGUCaGCgCCGAGCugGCc -3'
miRNA:   3'- cACgUGCuGCAGcCGaGGCUCGugUG- -5'
8987 5' -57.8 NC_002512.2 + 9646 0.67 0.845538
Target:  5'- -aGCACaccAUGUCGGCcaggCGGGCGCACu -3'
miRNA:   3'- caCGUGc--UGCAGCCGag--GCUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 92558 0.67 0.845538
Target:  5'- -gGCgACGACGUCGGaggcgCCGAcGC-CGCg -3'
miRNA:   3'- caCG-UGCUGCAGCCga---GGCU-CGuGUG- -5'
8987 5' -57.8 NC_002512.2 + 133929 0.67 0.845538
Target:  5'- cUGUACGGCGgCGGC-CCGAcgGCcCGCg -3'
miRNA:   3'- cACGUGCUGCaGCCGaGGCU--CGuGUG- -5'
8987 5' -57.8 NC_002512.2 + 54265 0.67 0.845538
Target:  5'- -gGCgGCGGCGUCGGCgacCCuGGCACc- -3'
miRNA:   3'- caCG-UGCUGCAGCCGa--GGcUCGUGug -5'
8987 5' -57.8 NC_002512.2 + 94881 0.68 0.840863
Target:  5'- cGUGUAgGAUGUCGGUccacgucagcagcucUCggggCGAGCACAUg -3'
miRNA:   3'- -CACGUgCUGCAGCCG---------------AG----GCUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 95090 0.68 0.837711
Target:  5'- -aGCGagacCGGCGUCgGGC-CCGGGgACGCg -3'
miRNA:   3'- caCGU----GCUGCAG-CCGaGGCUCgUGUG- -5'
8987 5' -57.8 NC_002512.2 + 229555 0.68 0.837711
Target:  5'- -gGCGgGGCGcCGGCggagGAGCGCGCg -3'
miRNA:   3'- caCGUgCUGCaGCCGagg-CUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 115673 0.68 0.837711
Target:  5'- cUGCACGugGgcUCGGg-CCGGGCcuacaGCACg -3'
miRNA:   3'- cACGUGCugC--AGCCgaGGCUCG-----UGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.