miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8988 3' -56.5 NC_002512.2 + 83190 0.68 0.883027
Target:  5'- -cGUCUCcgucgcccgUCCGcgCgCGGGGCGGgGGGa -3'
miRNA:   3'- gaCAGAG---------AGGCuaG-GCCCCGUUgCUC- -5'
8988 3' -56.5 NC_002512.2 + 98311 0.68 0.902264
Target:  5'- -cGUCUUUcCCGAggggCuCGGGGCcgggGACGGGg -3'
miRNA:   3'- gaCAGAGA-GGCUa---G-GCCCCG----UUGCUC- -5'
8988 3' -56.5 NC_002512.2 + 18418 0.68 0.902264
Target:  5'- -gGUCgaggugUCgGAUCCGGGGCAGCc-- -3'
miRNA:   3'- gaCAGag----AGgCUAGGCCCCGUUGcuc -5'
8988 3' -56.5 NC_002512.2 + 122782 0.68 0.902264
Target:  5'- -cGUCUCccCCGAgggcgCCGGgcccuGGCGGCGGGu -3'
miRNA:   3'- gaCAGAGa-GGCUa----GGCC-----CCGUUGCUC- -5'
8988 3' -56.5 NC_002512.2 + 95012 0.67 0.908247
Target:  5'- -cGUCgcgUCG-UCCGGGGCAGgGGGg -3'
miRNA:   3'- gaCAGagaGGCuAGGCCCCGUUgCUC- -5'
8988 3' -56.5 NC_002512.2 + 210606 0.68 0.889651
Target:  5'- -gGUcCUCUCCGAucaccuggUCCGgcuGGGCAacuGCGAGu -3'
miRNA:   3'- gaCA-GAGAGGCU--------AGGC---CCCGU---UGCUC- -5'
8988 3' -56.5 NC_002512.2 + 128636 0.68 0.876197
Target:  5'- cCUGUCUCcugacgCUGggCCGGGGgAuCGAGc -3'
miRNA:   3'- -GACAGAGa-----GGCuaGGCCCCgUuGCUC- -5'
8988 3' -56.5 NC_002512.2 + 202275 0.69 0.869164
Target:  5'- -cGUCUCUCCGcgcugugggaCCGGGGCGcCGuGc -3'
miRNA:   3'- gaCAGAGAGGCua--------GGCCCCGUuGCuC- -5'
8988 3' -56.5 NC_002512.2 + 156430 0.7 0.823013
Target:  5'- gCUGUCcgCggCCGGgcuggggggcUCCgGGGGCGGCGGGg -3'
miRNA:   3'- -GACAGa-Ga-GGCU----------AGG-CCCCGUUGCUC- -5'
8988 3' -56.5 NC_002512.2 + 224333 0.7 0.814719
Target:  5'- uCUGUUUUUCCGcggcgccgcgCCGGGGUcGCGGGc -3'
miRNA:   3'- -GACAGAGAGGCua--------GGCCCCGuUGCUC- -5'
8988 3' -56.5 NC_002512.2 + 167725 0.7 0.788943
Target:  5'- -gGUCUCUCguCGAg-CGGGGCGAgGAGc -3'
miRNA:   3'- gaCAGAGAG--GCUagGCCCCGUUgCUC- -5'
8988 3' -56.5 NC_002512.2 + 150028 0.67 0.914012
Target:  5'- --cUC-CUCCGAggacgagggggCCGGGGaCGACGGGg -3'
miRNA:   3'- gacAGaGAGGCUa----------GGCCCC-GUUGCUC- -5'
8988 3' -56.5 NC_002512.2 + 204959 0.67 0.919557
Target:  5'- -gGUCgcugCgggCCGAgcccgacgCCGcGGGCGACGGGg -3'
miRNA:   3'- gaCAGa---Ga--GGCUa-------GGC-CCCGUUGCUC- -5'
8988 3' -56.5 NC_002512.2 + 210476 0.67 0.92488
Target:  5'- uCUGUCUCUCgaggagcaGAUCCGcGaGGCGagggcccgacGCGAGc -3'
miRNA:   3'- -GACAGAGAGg-------CUAGGC-C-CCGU----------UGCUC- -5'
8988 3' -56.5 NC_002512.2 + 200503 0.67 0.929981
Target:  5'- -cGUC-CUCCGA-CCGGGGCu-CGu- -3'
miRNA:   3'- gaCAGaGAGGCUaGGCCCCGuuGCuc -5'
8988 3' -56.5 NC_002512.2 + 214574 0.67 0.934861
Target:  5'- -cGUCccCUCCcg-CCuGGGCGACGAGa -3'
miRNA:   3'- gaCAGa-GAGGcuaGGcCCCGUUGCUC- -5'
8988 3' -56.5 NC_002512.2 + 154772 0.66 0.939519
Target:  5'- -cGUCUCcCCGuGUCCGccaGGCGGCGAc -3'
miRNA:   3'- gaCAGAGaGGC-UAGGCc--CCGUUGCUc -5'
8988 3' -56.5 NC_002512.2 + 202589 0.66 0.947765
Target:  5'- -gGUCUCUCCGAgagcgugacuguuUUCGaGGGCAgaGCGc- -3'
miRNA:   3'- gaCAGAGAGGCU-------------AGGC-CCCGU--UGCuc -5'
8988 3' -56.5 NC_002512.2 + 153338 0.66 0.959553
Target:  5'- gCUGgg---CCGGUCCGGGuCGGCGGGu -3'
miRNA:   3'- -GACagagaGGCUAGGCCCcGUUGCUC- -5'
8988 3' -56.5 NC_002512.2 + 189801 0.94 0.043071
Target:  5'- uCUGUCUCUCCGAUCCGGGGacACGAGa -3'
miRNA:   3'- -GACAGAGAGGCUAGGCCCCguUGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.