Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8988 | 3' | -56.5 | NC_002512.2 | + | 91885 | 0.66 | 0.948177 |
Target: 5'- -cGUCugaaaguggaUCUCCGucuucUCCuGGGGCGGCGGc -3' miRNA: 3'- gaCAG----------AGAGGCu----AGG-CCCCGUUGCUc -5' |
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8988 | 3' | -56.5 | NC_002512.2 | + | 141890 | 0.67 | 0.919557 |
Target: 5'- -gGUCuauauaaaUCUCCGcgUCGGGGCGccgcggccccgACGGGg -3' miRNA: 3'- gaCAG--------AGAGGCuaGGCCCCGU-----------UGCUC- -5' |
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8988 | 3' | -56.5 | NC_002512.2 | + | 188557 | 0.67 | 0.919557 |
Target: 5'- -cGUCggaUCCGGUCguguuCGGGGaCAACGAa -3' miRNA: 3'- gaCAGag-AGGCUAG-----GCCCC-GUUGCUc -5' |
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8988 | 3' | -56.5 | NC_002512.2 | + | 5493 | 0.67 | 0.92488 |
Target: 5'- gUGgcgCgcgUCCGcgCCGGGGUcGCGAGg -3' miRNA: 3'- gACa--Gag-AGGCuaGGCCCCGuUGCUC- -5' |
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8988 | 3' | -56.5 | NC_002512.2 | + | 109470 | 0.67 | 0.92488 |
Target: 5'- ---cCUCUUCGGUCCGGGugaGCAGggUGAGg -3' miRNA: 3'- gacaGAGAGGCUAGGCCC---CGUU--GCUC- -5' |
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8988 | 3' | -56.5 | NC_002512.2 | + | 131081 | 0.67 | 0.929981 |
Target: 5'- -cGUCgCUCCGGccgCCGGGGUaccugGACGuGg -3' miRNA: 3'- gaCAGaGAGGCUa--GGCCCCG-----UUGCuC- -5' |
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8988 | 3' | -56.5 | NC_002512.2 | + | 133844 | 0.67 | 0.931959 |
Target: 5'- -gGcCUCUCCGGaggacaccgaggacgUCCuGGGGCGGCucGAGg -3' miRNA: 3'- gaCaGAGAGGCU---------------AGG-CCCCGUUG--CUC- -5' |
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8988 | 3' | -56.5 | NC_002512.2 | + | 67767 | 0.67 | 0.93486 |
Target: 5'- -gGUCgUCUCCGGcgCCGGGGUcguCGGu -3' miRNA: 3'- gaCAG-AGAGGCUa-GGCCCCGuu-GCUc -5' |
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8988 | 3' | -56.5 | NC_002512.2 | + | 34767 | 0.66 | 0.948177 |
Target: 5'- -cGcCUCUCCc--CCGGGuCAACGAGg -3' miRNA: 3'- gaCaGAGAGGcuaGGCCCcGUUGCUC- -5' |
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8988 | 3' | -56.5 | NC_002512.2 | + | 142268 | 0.67 | 0.919012 |
Target: 5'- -gGUCgUCgUCCGggCCGGGGacggcguCGACGGGg -3' miRNA: 3'- gaCAG-AG-AGGCuaGGCCCC-------GUUGCUC- -5' |
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8988 | 3' | -56.5 | NC_002512.2 | + | 95012 | 0.67 | 0.908247 |
Target: 5'- -cGUCgcgUCG-UCCGGGGCAGgGGGg -3' miRNA: 3'- gaCAGagaGGCuAGGCCCCGUUgCUC- -5' |
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8988 | 3' | -56.5 | NC_002512.2 | + | 122782 | 0.68 | 0.902264 |
Target: 5'- -cGUCUCccCCGAgggcgCCGGgcccuGGCGGCGGGu -3' miRNA: 3'- gaCAGAGa-GGCUa----GGCC-----CCGUUGCUC- -5' |
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8988 | 3' | -56.5 | NC_002512.2 | + | 87081 | 0.69 | 0.831146 |
Target: 5'- -cGUUcCUCgGGUCgCGGGGCGACGuGc -3' miRNA: 3'- gaCAGaGAGgCUAG-GCCCCGUUGCuC- -5' |
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8988 | 3' | -56.5 | NC_002512.2 | + | 119757 | 0.69 | 0.854511 |
Target: 5'- gCUGaggaUCUCguUCUGGUCCGGGGUGugGuAGa -3' miRNA: 3'- -GAC----AGAG--AGGCUAGGCCCCGUugC-UC- -5' |
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8988 | 3' | -56.5 | NC_002512.2 | + | 142019 | 0.69 | 0.861934 |
Target: 5'- -cGUCUCuUCCGcggCCGGGGgcCGGCGAc -3' miRNA: 3'- gaCAGAG-AGGCua-GGCCCC--GUUGCUc -5' |
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8988 | 3' | -56.5 | NC_002512.2 | + | 152797 | 0.69 | 0.861934 |
Target: 5'- -cGUCUCggaGGUCCGcggcgacggcGGGCGGCGAGc -3' miRNA: 3'- gaCAGAGaggCUAGGC----------CCCGUUGCUC- -5' |
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8988 | 3' | -56.5 | NC_002512.2 | + | 123357 | 0.68 | 0.883027 |
Target: 5'- -cGUC-Caa-GGUCCGGGGCcGCGAGa -3' miRNA: 3'- gaCAGaGaggCUAGGCCCCGuUGCUC- -5' |
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8988 | 3' | -56.5 | NC_002512.2 | + | 83190 | 0.68 | 0.883027 |
Target: 5'- -cGUCUCcgucgcccgUCCGcgCgCGGGGCGGgGGGa -3' miRNA: 3'- gaCAGAG---------AGGCuaG-GCCCCGUUgCUC- -5' |
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8988 | 3' | -56.5 | NC_002512.2 | + | 98311 | 0.68 | 0.902264 |
Target: 5'- -cGUCUUUcCCGAggggCuCGGGGCcgggGACGGGg -3' miRNA: 3'- gaCAGAGA-GGCUa---G-GCCCCG----UUGCUC- -5' |
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8988 | 3' | -56.5 | NC_002512.2 | + | 18418 | 0.68 | 0.902264 |
Target: 5'- -gGUCgaggugUCgGAUCCGGGGCAGCc-- -3' miRNA: 3'- gaCAGag----AGgCUAGGCCCCGUUGcuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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