Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8988 | 3' | -56.5 | NC_002512.2 | + | 189801 | 0.94 | 0.043071 |
Target: 5'- uCUGUCUCUCCGAUCCGGGGacACGAGa -3' miRNA: 3'- -GACAGAGAGGCUAGGCCCCguUGCUC- -5' |
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8988 | 3' | -56.5 | NC_002512.2 | + | 120813 | 0.74 | 0.577939 |
Target: 5'- -gGUCUCUCgGAcCCGGGacGCGGCGGGu -3' miRNA: 3'- gaCAGAGAGgCUaGGCCC--CGUUGCUC- -5' |
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8988 | 3' | -56.5 | NC_002512.2 | + | 179281 | 0.7 | 0.777394 |
Target: 5'- gUGUCgUCcCCGGaucgcaccguccagUCCGcGGGCGGCGAGg -3' miRNA: 3'- gACAG-AGaGGCU--------------AGGC-CCCGUUGCUC- -5' |
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8988 | 3' | -56.5 | NC_002512.2 | + | 167725 | 0.7 | 0.788943 |
Target: 5'- -gGUCUCUCguCGAg-CGGGGCGAgGAGc -3' miRNA: 3'- gaCAGAGAG--GCUagGCCCCGUUgCUC- -5' |
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8988 | 3' | -56.5 | NC_002512.2 | + | 152695 | 0.7 | 0.788943 |
Target: 5'- -gGUCUCgucgcguccCCGGUCgGGGuGCGGCGGGc -3' miRNA: 3'- gaCAGAGa--------GGCUAGgCCC-CGUUGCUC- -5' |
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8988 | 3' | -56.5 | NC_002512.2 | + | 224333 | 0.7 | 0.814719 |
Target: 5'- uCUGUUUUUCCGcggcgccgcgCCGGGGUcGCGGGc -3' miRNA: 3'- -GACAGAGAGGCua--------GGCCCCGuUGCUC- -5' |
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8988 | 3' | -56.5 | NC_002512.2 | + | 156430 | 0.7 | 0.823013 |
Target: 5'- gCUGUCcgCggCCGGgcuggggggcUCCgGGGGCGGCGGGg -3' miRNA: 3'- -GACAGa-Ga-GGCU----------AGG-CCCCGUUGCUC- -5' |
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8988 | 3' | -56.5 | NC_002512.2 | + | 87081 | 0.69 | 0.831146 |
Target: 5'- -cGUUcCUCgGGUCgCGGGGCGACGuGc -3' miRNA: 3'- gaCAGaGAGgCUAG-GCCCCGUUGCuC- -5' |
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8988 | 3' | -56.5 | NC_002512.2 | + | 119757 | 0.69 | 0.854511 |
Target: 5'- gCUGaggaUCUCguUCUGGUCCGGGGUGugGuAGa -3' miRNA: 3'- -GAC----AGAG--AGGCUAGGCCCCGUugC-UC- -5' |
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8988 | 3' | -56.5 | NC_002512.2 | + | 152797 | 0.69 | 0.861934 |
Target: 5'- -cGUCUCggaGGUCCGcggcgacggcGGGCGGCGAGc -3' miRNA: 3'- gaCAGAGaggCUAGGC----------CCCGUUGCUC- -5' |
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8988 | 3' | -56.5 | NC_002512.2 | + | 142019 | 0.69 | 0.861934 |
Target: 5'- -cGUCUCuUCCGcggCCGGGGgcCGGCGAc -3' miRNA: 3'- gaCAGAG-AGGCua-GGCCCC--GUUGCUc -5' |
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8988 | 3' | -56.5 | NC_002512.2 | + | 202275 | 0.69 | 0.869164 |
Target: 5'- -cGUCUCUCCGcgcugugggaCCGGGGCGcCGuGc -3' miRNA: 3'- gaCAGAGAGGCua--------GGCCCCGUuGCuC- -5' |
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8988 | 3' | -56.5 | NC_002512.2 | + | 128636 | 0.68 | 0.876197 |
Target: 5'- cCUGUCUCcugacgCUGggCCGGGGgAuCGAGc -3' miRNA: 3'- -GACAGAGa-----GGCuaGGCCCCgUuGCUC- -5' |
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8988 | 3' | -56.5 | NC_002512.2 | + | 83190 | 0.68 | 0.883027 |
Target: 5'- -cGUCUCcgucgcccgUCCGcgCgCGGGGCGGgGGGa -3' miRNA: 3'- gaCAGAG---------AGGCuaG-GCCCCGUUgCUC- -5' |
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8988 | 3' | -56.5 | NC_002512.2 | + | 123357 | 0.68 | 0.883027 |
Target: 5'- -cGUC-Caa-GGUCCGGGGCcGCGAGa -3' miRNA: 3'- gaCAGaGaggCUAGGCCCCGuUGCUC- -5' |
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8988 | 3' | -56.5 | NC_002512.2 | + | 210606 | 0.68 | 0.889651 |
Target: 5'- -gGUcCUCUCCGAucaccuggUCCGgcuGGGCAacuGCGAGu -3' miRNA: 3'- gaCA-GAGAGGCU--------AGGC---CCCGU---UGCUC- -5' |
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8988 | 3' | -56.5 | NC_002512.2 | + | 122782 | 0.68 | 0.902264 |
Target: 5'- -cGUCUCccCCGAgggcgCCGGgcccuGGCGGCGGGu -3' miRNA: 3'- gaCAGAGa-GGCUa----GGCC-----CCGUUGCUC- -5' |
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8988 | 3' | -56.5 | NC_002512.2 | + | 18418 | 0.68 | 0.902264 |
Target: 5'- -gGUCgaggugUCgGAUCCGGGGCAGCc-- -3' miRNA: 3'- gaCAGag----AGgCUAGGCCCCGUUGcuc -5' |
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8988 | 3' | -56.5 | NC_002512.2 | + | 98311 | 0.68 | 0.902264 |
Target: 5'- -cGUCUUUcCCGAggggCuCGGGGCcgggGACGGGg -3' miRNA: 3'- gaCAGAGA-GGCUa---G-GCCCCG----UUGCUC- -5' |
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8988 | 3' | -56.5 | NC_002512.2 | + | 95012 | 0.67 | 0.908247 |
Target: 5'- -cGUCgcgUCG-UCCGGGGCAGgGGGg -3' miRNA: 3'- gaCAGagaGGCuAGGCCCCGUUgCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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