miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8988 3' -56.5 NC_002512.2 + 5493 0.67 0.92488
Target:  5'- gUGgcgCgcgUCCGcgCCGGGGUcGCGAGg -3'
miRNA:   3'- gACa--Gag-AGGCuaGGCCCCGuUGCUC- -5'
8988 3' -56.5 NC_002512.2 + 18418 0.68 0.902264
Target:  5'- -gGUCgaggugUCgGAUCCGGGGCAGCc-- -3'
miRNA:   3'- gaCAGag----AGgCUAGGCCCCGUUGcuc -5'
8988 3' -56.5 NC_002512.2 + 29253 0.66 0.959553
Target:  5'- -cGUC-CUCCGA--CGGGGaCGAgGAGg -3'
miRNA:   3'- gaCAGaGAGGCUagGCCCC-GUUgCUC- -5'
8988 3' -56.5 NC_002512.2 + 34767 0.66 0.948177
Target:  5'- -cGcCUCUCCc--CCGGGuCAACGAGg -3'
miRNA:   3'- gaCaGAGAGGcuaGGCCCcGUUGCUC- -5'
8988 3' -56.5 NC_002512.2 + 43065 0.66 0.955971
Target:  5'- -gGcCUCgccgaggcaCCGGUcCCGGGGCGcgGCGAGc -3'
miRNA:   3'- gaCaGAGa--------GGCUA-GGCCCCGU--UGCUC- -5'
8988 3' -56.5 NC_002512.2 + 67767 0.67 0.93486
Target:  5'- -gGUCgUCUCCGGcgCCGGGGUcguCGGu -3'
miRNA:   3'- gaCAG-AGAGGCUa-GGCCCCGuu-GCUc -5'
8988 3' -56.5 NC_002512.2 + 83190 0.68 0.883027
Target:  5'- -cGUCUCcgucgcccgUCCGcgCgCGGGGCGGgGGGa -3'
miRNA:   3'- gaCAGAG---------AGGCuaG-GCCCCGUUgCUC- -5'
8988 3' -56.5 NC_002512.2 + 87081 0.69 0.831146
Target:  5'- -cGUUcCUCgGGUCgCGGGGCGACGuGc -3'
miRNA:   3'- gaCAGaGAGgCUAG-GCCCCGUUGCuC- -5'
8988 3' -56.5 NC_002512.2 + 91885 0.66 0.948177
Target:  5'- -cGUCugaaaguggaUCUCCGucuucUCCuGGGGCGGCGGc -3'
miRNA:   3'- gaCAG----------AGAGGCu----AGG-CCCCGUUGCUc -5'
8988 3' -56.5 NC_002512.2 + 95012 0.67 0.908247
Target:  5'- -cGUCgcgUCG-UCCGGGGCAGgGGGg -3'
miRNA:   3'- gaCAGagaGGCuAGGCCCCGUUgCUC- -5'
8988 3' -56.5 NC_002512.2 + 98311 0.68 0.902264
Target:  5'- -cGUCUUUcCCGAggggCuCGGGGCcgggGACGGGg -3'
miRNA:   3'- gaCAGAGA-GGCUa---G-GCCCCG----UUGCUC- -5'
8988 3' -56.5 NC_002512.2 + 104283 0.66 0.948177
Target:  5'- -cGUCUUUCuCGcGUCCGGcGGCGG-GAGg -3'
miRNA:   3'- gaCAGAGAG-GC-UAGGCC-CCGUUgCUC- -5'
8988 3' -56.5 NC_002512.2 + 109470 0.67 0.92488
Target:  5'- ---cCUCUUCGGUCCGGGugaGCAGggUGAGg -3'
miRNA:   3'- gacaGAGAGGCUAGGCCC---CGUU--GCUC- -5'
8988 3' -56.5 NC_002512.2 + 119757 0.69 0.854511
Target:  5'- gCUGaggaUCUCguUCUGGUCCGGGGUGugGuAGa -3'
miRNA:   3'- -GAC----AGAG--AGGCUAGGCCCCGUugC-UC- -5'
8988 3' -56.5 NC_002512.2 + 120813 0.74 0.577939
Target:  5'- -gGUCUCUCgGAcCCGGGacGCGGCGGGu -3'
miRNA:   3'- gaCAGAGAGgCUaGGCCC--CGUUGCUC- -5'
8988 3' -56.5 NC_002512.2 + 122782 0.68 0.902264
Target:  5'- -cGUCUCccCCGAgggcgCCGGgcccuGGCGGCGGGu -3'
miRNA:   3'- gaCAGAGa-GGCUa----GGCC-----CCGUUGCUC- -5'
8988 3' -56.5 NC_002512.2 + 123357 0.68 0.883027
Target:  5'- -cGUC-Caa-GGUCCGGGGCcGCGAGa -3'
miRNA:   3'- gaCAGaGaggCUAGGCCCCGuUGCUC- -5'
8988 3' -56.5 NC_002512.2 + 128636 0.68 0.876197
Target:  5'- cCUGUCUCcugacgCUGggCCGGGGgAuCGAGc -3'
miRNA:   3'- -GACAGAGa-----GGCuaGGCCCCgUuGCUC- -5'
8988 3' -56.5 NC_002512.2 + 130482 0.66 0.952181
Target:  5'- -gGUCggggC-CCGAUCCGucgcagccGGGCuGCGAGg -3'
miRNA:   3'- gaCAGa---GaGGCUAGGC--------CCCGuUGCUC- -5'
8988 3' -56.5 NC_002512.2 + 131081 0.67 0.929981
Target:  5'- -cGUCgCUCCGGccgCCGGGGUaccugGACGuGg -3'
miRNA:   3'- gaCAGaGAGGCUa--GGCCCCG-----UUGCuC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.