miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8988 5' -58.3 NC_002512.2 + 167728 0.67 0.867123
Target:  5'- cUCUCGUCgaGCgGGGCGAGgagcugccggGCGUCgGc -3'
miRNA:   3'- cAGAGCAGggCG-CCCGCUU----------UGCAGgC- -5'
8988 5' -58.3 NC_002512.2 + 222926 0.67 0.867123
Target:  5'- -gCUCGgCCCGCGGGCc-AACGaccuggCCGg -3'
miRNA:   3'- caGAGCaGGGCGCCCGcuUUGCa-----GGC- -5'
8988 5' -58.3 NC_002512.2 + 218085 0.67 0.866417
Target:  5'- ---cCGUCCCuguccguggggaaGCGGGCGucGCGcCCGg -3'
miRNA:   3'- cagaGCAGGG-------------CGCCCGCuuUGCaGGC- -5'
8988 5' -58.3 NC_002512.2 + 218918 0.67 0.866417
Target:  5'- -gCUCGUgCCGCugcccuggcccgaGGGCGccGGCGUCCu -3'
miRNA:   3'- caGAGCAgGGCG-------------CCCGCu-UUGCAGGc -5'
8988 5' -58.3 NC_002512.2 + 194978 0.67 0.859975
Target:  5'- gGUCUCGUCCuccucucggCGCaagaGGGCGAcGGCGgucCCGg -3'
miRNA:   3'- -CAGAGCAGG---------GCG----CCCGCU-UUGCa--GGC- -5'
8988 5' -58.3 NC_002512.2 + 204211 0.67 0.859975
Target:  5'- -cCUgCGUUCCGaCGaGGCGcAGCGUCUGg -3'
miRNA:   3'- caGA-GCAGGGC-GC-CCGCuUUGCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 82696 0.67 0.859975
Target:  5'- uGUCggCGUCCgugCGCGGcGCGGGcccGCGuUCCGg -3'
miRNA:   3'- -CAGa-GCAGG---GCGCC-CGCUU---UGC-AGGC- -5'
8988 5' -58.3 NC_002512.2 + 208661 0.67 0.859975
Target:  5'- cGUCUcCG-CCC-CGGGCG--GCGUCCc -3'
miRNA:   3'- -CAGA-GCaGGGcGCCCGCuuUGCAGGc -5'
8988 5' -58.3 NC_002512.2 + 207679 0.67 0.859975
Target:  5'- -gCUC-UCCCGCcGGcCGAAGCGcUCCGu -3'
miRNA:   3'- caGAGcAGGGCGcCC-GCUUUGC-AGGC- -5'
8988 5' -58.3 NC_002512.2 + 84683 0.68 0.852643
Target:  5'- -cCUCGUCCCGCagcccgGGGUcGAAC-UCCGu -3'
miRNA:   3'- caGAGCAGGGCG------CCCGcUUUGcAGGC- -5'
8988 5' -58.3 NC_002512.2 + 106663 0.68 0.852643
Target:  5'- --gUCGagCCCGCacuGGGCGGcGACGUCCu -3'
miRNA:   3'- cagAGCa-GGGCG---CCCGCU-UUGCAGGc -5'
8988 5' -58.3 NC_002512.2 + 152700 0.68 0.844371
Target:  5'- cGUCgCGUCCCcggucggggugcgGCGGGCaggggacacgcaGAGGCGuUCCGg -3'
miRNA:   3'- -CAGaGCAGGG-------------CGCCCG------------CUUUGC-AGGC- -5'
8988 5' -58.3 NC_002512.2 + 83190 0.68 0.842844
Target:  5'- cGUCUcCGUCgCCcguccgcgcgcgggGCGGGgGGAGCGUCgGu -3'
miRNA:   3'- -CAGA-GCAG-GG--------------CGCCCgCUUUGCAGgC- -5'
8988 5' -58.3 NC_002512.2 + 6697 0.68 0.829597
Target:  5'- ---cCGUcCCCGuCGGGCGGccCGUCCa -3'
miRNA:   3'- cagaGCA-GGGC-GCCCGCUuuGCAGGc -5'
8988 5' -58.3 NC_002512.2 + 75537 0.68 0.821586
Target:  5'- aUCUUGUCCCaaaaaaauccGCGGGCucgccGggGCGgggCCGc -3'
miRNA:   3'- cAGAGCAGGG----------CGCCCG-----CuuUGCa--GGC- -5'
8988 5' -58.3 NC_002512.2 + 1959 0.68 0.821586
Target:  5'- -cCUCGUCCgccgGCGucggaGGCGgcGCGUCCGu -3'
miRNA:   3'- caGAGCAGGg---CGC-----CCGCuuUGCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 165114 0.68 0.821586
Target:  5'- aUCUC-UCCCGCGGG--GAACGUCa- -3'
miRNA:   3'- cAGAGcAGGGCGCCCgcUUUGCAGgc -5'
8988 5' -58.3 NC_002512.2 + 126721 0.68 0.821586
Target:  5'- -cCUCGUCCuCGcCGGGCGcgGCGcgugCCu -3'
miRNA:   3'- caGAGCAGG-GC-GCCCGCuuUGCa---GGc -5'
8988 5' -58.3 NC_002512.2 + 45320 0.68 0.821586
Target:  5'- ---cCGgCCCGCGGGuCGGAGggcCGUCCGc -3'
miRNA:   3'- cagaGCaGGGCGCCC-GCUUU---GCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 16074 0.68 0.818337
Target:  5'- cUCUCGUCCagggaacccuccCGGGCcGAGCGUCCc -3'
miRNA:   3'- cAGAGCAGGgc----------GCCCGcUUUGCAGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.