miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8988 5' -58.3 NC_002512.2 + 45286 0.74 0.505762
Target:  5'- -gCUCGUCUCGCGGGUcGGACGgaccgCCGc -3'
miRNA:   3'- caGAGCAGGGCGCCCGcUUUGCa----GGC- -5'
8988 5' -58.3 NC_002512.2 + 45320 0.68 0.821586
Target:  5'- ---cCGgCCCGCGGGuCGGAGggcCGUCCGc -3'
miRNA:   3'- cagaGCaGGGCGCCC-GCUUU---GCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 57309 0.79 0.29277
Target:  5'- gGUCUCGUaCUCGCGGGCGcggagGAACGUCaCGc -3'
miRNA:   3'- -CAGAGCA-GGGCGCCCGC-----UUUGCAG-GC- -5'
8988 5' -58.3 NC_002512.2 + 73224 0.69 0.78807
Target:  5'- cGUacgCGUCgUCGCGGGCGAAG-GUCCc -3'
miRNA:   3'- -CAga-GCAG-GGCGCCCGCUUUgCAGGc -5'
8988 5' -58.3 NC_002512.2 + 74641 0.66 0.927606
Target:  5'- cGUCgaCG-CCgCGaCGGGCGGGACGgCCGc -3'
miRNA:   3'- -CAGa-GCaGG-GC-GCCCGCUUUGCaGGC- -5'
8988 5' -58.3 NC_002512.2 + 75437 0.71 0.677457
Target:  5'- ---aCGUCCgGaucgGGGCGGGACGUCCu -3'
miRNA:   3'- cagaGCAGGgCg---CCCGCUUUGCAGGc -5'
8988 5' -58.3 NC_002512.2 + 75537 0.68 0.821586
Target:  5'- aUCUUGUCCCaaaaaaauccGCGGGCucgccGggGCGgggCCGc -3'
miRNA:   3'- cAGAGCAGGG----------CGCCCG-----CuuUGCa--GGC- -5'
8988 5' -58.3 NC_002512.2 + 77307 0.66 0.927606
Target:  5'- cGUgUCGUUUCGCGaGGCGAcGGgGUCuCGg -3'
miRNA:   3'- -CAgAGCAGGGCGC-CCGCU-UUgCAG-GC- -5'
8988 5' -58.3 NC_002512.2 + 78040 0.66 0.917179
Target:  5'- gGUCgcgUGUCCgacaCGCGGGCauucauccgaGGAACGUCgGg -3'
miRNA:   3'- -CAGa--GCAGG----GCGCCCG----------CUUUGCAGgC- -5'
8988 5' -58.3 NC_002512.2 + 78305 0.71 0.68704
Target:  5'- cGUCUCGuUUCCGCGacuGCGAGcgacCGUCCGg -3'
miRNA:   3'- -CAGAGC-AGGGCGCc--CGCUUu---GCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 79585 0.72 0.60985
Target:  5'- gGUCUCGcUCCuccgccucuuCGCGGGCGGcAGCG-CCGg -3'
miRNA:   3'- -CAGAGC-AGG----------GCGCCCGCU-UUGCaGGC- -5'
8988 5' -58.3 NC_002512.2 + 80668 0.77 0.383561
Target:  5'- cGUCg-GUCCCGCggcggcggcgacggGGGCGAGcgGCGUCCGg -3'
miRNA:   3'- -CAGagCAGGGCG--------------CCCGCUU--UGCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 81435 0.7 0.75255
Target:  5'- cUC-CGUCCCGCGGGgGGcccggccccCGUCCu -3'
miRNA:   3'- cAGaGCAGGGCGCCCgCUuu-------GCAGGc -5'
8988 5' -58.3 NC_002512.2 + 82696 0.67 0.859975
Target:  5'- uGUCggCGUCCgugCGCGGcGCGGGcccGCGuUCCGg -3'
miRNA:   3'- -CAGa-GCAGG---GCGCC-CGCUU---UGC-AGGC- -5'
8988 5' -58.3 NC_002512.2 + 83190 0.68 0.842844
Target:  5'- cGUCUcCGUCgCCcguccgcgcgcgggGCGGGgGGAGCGUCgGu -3'
miRNA:   3'- -CAGA-GCAG-GG--------------CGCCCgCUUUGCAGgC- -5'
8988 5' -58.3 NC_002512.2 + 84683 0.68 0.852643
Target:  5'- -cCUCGUCCCGCagcccgGGGUcGAAC-UCCGu -3'
miRNA:   3'- caGAGCAGGGCG------CCCGcUUUGcAGGC- -5'
8988 5' -58.3 NC_002512.2 + 87659 0.66 0.922499
Target:  5'- aUCccgCGUUCCGCGaaGGCGAcGACGUCg- -3'
miRNA:   3'- cAGa--GCAGGGCGC--CCGCU-UUGCAGgc -5'
8988 5' -58.3 NC_002512.2 + 88163 0.71 0.68704
Target:  5'- -aCUCGUCgCC-CGGGaCGGucGCGUCCGg -3'
miRNA:   3'- caGAGCAG-GGcGCCC-GCUu-UGCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 89577 0.66 0.899946
Target:  5'- -gCUCG-CCUGCGgcggguGGCGGGAUGUCgCGg -3'
miRNA:   3'- caGAGCaGGGCGC------CCGCUUUGCAG-GC- -5'
8988 5' -58.3 NC_002512.2 + 91483 0.66 0.898119
Target:  5'- -aCUUGguggCCCGCGGcuCGAAgcgcaggcuccguuGCGUCCGg -3'
miRNA:   3'- caGAGCa---GGGCGCCc-GCUU--------------UGCAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.