miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8988 5' -58.3 NC_002512.2 + 1827 0.67 0.874768
Target:  5'- cGUCUCccgcgccgcagccgUCCGCGGGCGucucgccgcCGUCCGg -3'
miRNA:   3'- -CAGAGca------------GGGCGCCCGCuuu------GCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 1959 0.68 0.821586
Target:  5'- -cCUCGUCCgccgGCGucggaGGCGgcGCGUCCGu -3'
miRNA:   3'- caGAGCAGGg---CGC-----CCGCuuUGCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 2117 0.71 0.706075
Target:  5'- -gCUCGg-UCGCGGGCGucGAGCGUUCGg -3'
miRNA:   3'- caGAGCagGGCGCCCGC--UUUGCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 4167 0.69 0.796655
Target:  5'- aGUCgccgCGgCUCGCGGGCGAcacauccugagGACG-CCGg -3'
miRNA:   3'- -CAGa---GCaGGGCGCCCGCU-----------UUGCaGGC- -5'
8988 5' -58.3 NC_002512.2 + 5623 0.72 0.64854
Target:  5'- uUCUC-UCUCGCGGGCGucGGGCG-CCGa -3'
miRNA:   3'- cAGAGcAGGGCGCCCGC--UUUGCaGGC- -5'
8988 5' -58.3 NC_002512.2 + 5865 0.66 0.917179
Target:  5'- cGUCggaGUCCC--GGGCGu--CGUCCGa -3'
miRNA:   3'- -CAGag-CAGGGcgCCCGCuuuGCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 6077 0.68 0.81342
Target:  5'- cGUCgUCGUCCCgGCGGucgccgcCGAcguccccggcGACGUCCGg -3'
miRNA:   3'- -CAG-AGCAGGG-CGCCc------GCU----------UUGCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 6697 0.68 0.829597
Target:  5'- ---cCGUcCCCGuCGGGCGGccCGUCCa -3'
miRNA:   3'- cagaGCA-GGGC-GCCCGCUuuGCAGGc -5'
8988 5' -58.3 NC_002512.2 + 7234 0.66 0.927606
Target:  5'- -cCUCGgCCCGgccggccguCGcGGCGGAgcgGCGUCCGu -3'
miRNA:   3'- caGAGCaGGGC---------GC-CCGCUU---UGCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 9673 0.67 0.887417
Target:  5'- -aCUCGUCCCcCGGGCcgc-CGUCgGg -3'
miRNA:   3'- caGAGCAGGGcGCCCGcuuuGCAGgC- -5'
8988 5' -58.3 NC_002512.2 + 9885 0.71 0.6582
Target:  5'- cUCUCGaCCCGcCGGGCGAgggggagcGAgGUCCc -3'
miRNA:   3'- cAGAGCaGGGC-GCCCGCU--------UUgCAGGc -5'
8988 5' -58.3 NC_002512.2 + 10208 0.7 0.715513
Target:  5'- -cCUCGUCCU-CGGGCGgcGCGcCCa -3'
miRNA:   3'- caGAGCAGGGcGCCCGCuuUGCaGGc -5'
8988 5' -58.3 NC_002512.2 + 11278 0.71 0.667841
Target:  5'- cGUCcuUCGagUCCGCGGGCGAGACc-CCGg -3'
miRNA:   3'- -CAG--AGCa-GGGCGCCCGCUUUGcaGGC- -5'
8988 5' -58.3 NC_002512.2 + 15643 0.67 0.880849
Target:  5'- -cCUCGg-CCGCGGGCGGcgagccGACGagCCGc -3'
miRNA:   3'- caGAGCagGGCGCCCGCU------UUGCa-GGC- -5'
8988 5' -58.3 NC_002512.2 + 16074 0.68 0.818337
Target:  5'- cUCUCGUCCagggaacccuccCGGGCcGAGCGUCCc -3'
miRNA:   3'- cAGAGCAGGgc----------GCCCGcUUUGCAGGc -5'
8988 5' -58.3 NC_002512.2 + 21913 0.78 0.326381
Target:  5'- cGUCUCGUCgCCGCuacggaGGGCGAcGACGUgCCGa -3'
miRNA:   3'- -CAGAGCAG-GGCG------CCCGCU-UUGCA-GGC- -5'
8988 5' -58.3 NC_002512.2 + 24699 0.75 0.460916
Target:  5'- gGUCUCGUCgaggaCGCGGGCGAGggagacgcgGCGUCg- -3'
miRNA:   3'- -CAGAGCAGg----GCGCCCGCUU---------UGCAGgc -5'
8988 5' -58.3 NC_002512.2 + 25786 0.66 0.9059
Target:  5'- --gUCGaCCCGCGGGaUGuaauCGUCCGc -3'
miRNA:   3'- cagAGCaGGGCGCCC-GCuuu-GCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 37660 0.66 0.919333
Target:  5'- --aUC-UCUCGCGGGCGAcgucgaagaggccgaAGgGUCCGg -3'
miRNA:   3'- cagAGcAGGGCGCCCGCU---------------UUgCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 40052 0.76 0.401884
Target:  5'- cGUUUCG-CCCGCGGGaCGAGAC-UCCa -3'
miRNA:   3'- -CAGAGCaGGGCGCCC-GCUUUGcAGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.