Results 1 - 20 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8988 | 5' | -58.3 | NC_002512.2 | + | 129282 | 0.7 | 0.731407 |
Target: 5'- uGUCgugCGUCgagCCGCGGGCGcgguuuccccacccGAGCGcCCGg -3' miRNA: 3'- -CAGa--GCAG---GGCGCCCGC--------------UUUGCaGGC- -5' |
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8988 | 5' | -58.3 | NC_002512.2 | + | 11278 | 0.71 | 0.667841 |
Target: 5'- cGUCcuUCGagUCCGCGGGCGAGACc-CCGg -3' miRNA: 3'- -CAG--AGCa-GGGCGCCCGCUUUGcaGGC- -5' |
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8988 | 5' | -58.3 | NC_002512.2 | + | 109019 | 0.71 | 0.667841 |
Target: 5'- --gUCGUCCUGCGGacccGCGgcGCGUUCGa -3' miRNA: 3'- cagAGCAGGGCGCC----CGCuuUGCAGGC- -5' |
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8988 | 5' | -58.3 | NC_002512.2 | + | 75437 | 0.71 | 0.677457 |
Target: 5'- ---aCGUCCgGaucgGGGCGGGACGUCCu -3' miRNA: 3'- cagaGCAGGgCg---CCCGCUUUGCAGGc -5' |
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8988 | 5' | -58.3 | NC_002512.2 | + | 88163 | 0.71 | 0.68704 |
Target: 5'- -aCUCGUCgCC-CGGGaCGGucGCGUCCGg -3' miRNA: 3'- caGAGCAG-GGcGCCC-GCUu-UGCAGGC- -5' |
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8988 | 5' | -58.3 | NC_002512.2 | + | 123127 | 0.71 | 0.68704 |
Target: 5'- cGUCggcggcCGUCCCGgGGGaCGggGCGgcggcgCCGc -3' miRNA: 3'- -CAGa-----GCAGGGCgCCC-GCuuUGCa-----GGC- -5' |
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8988 | 5' | -58.3 | NC_002512.2 | + | 2117 | 0.71 | 0.706075 |
Target: 5'- -gCUCGg-UCGCGGGCGucGAGCGUUCGg -3' miRNA: 3'- caGAGCagGGCGCCCGC--UUUGCAGGC- -5' |
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8988 | 5' | -58.3 | NC_002512.2 | + | 10208 | 0.7 | 0.715513 |
Target: 5'- -cCUCGUCCU-CGGGCGgcGCGcCCa -3' miRNA: 3'- caGAGCAGGGcGCCCGCuuUGCaGGc -5' |
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8988 | 5' | -58.3 | NC_002512.2 | + | 125869 | 0.7 | 0.724887 |
Target: 5'- cUCUgGUCCgGCGGGCacggcuggaaccGGAccGCGUCCa -3' miRNA: 3'- cAGAgCAGGgCGCCCG------------CUU--UGCAGGc -5' |
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8988 | 5' | -58.3 | NC_002512.2 | + | 9885 | 0.71 | 0.6582 |
Target: 5'- cUCUCGaCCCGcCGGGCGAgggggagcGAgGUCCc -3' miRNA: 3'- cAGAGCaGGGC-GCCCGCU--------UUgCAGGc -5' |
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8988 | 5' | -58.3 | NC_002512.2 | + | 5623 | 0.72 | 0.64854 |
Target: 5'- uUCUC-UCUCGCGGGCGucGGGCG-CCGa -3' miRNA: 3'- cAGAGcAGGGCGCCCGC--UUUGCaGGC- -5' |
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8988 | 5' | -58.3 | NC_002512.2 | + | 79585 | 0.72 | 0.60985 |
Target: 5'- gGUCUCGcUCCuccgccucuuCGCGGGCGGcAGCG-CCGg -3' miRNA: 3'- -CAGAGC-AGG----------GCGCCCGCU-UUGCaGGC- -5' |
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8988 | 5' | -58.3 | NC_002512.2 | + | 21913 | 0.78 | 0.326381 |
Target: 5'- cGUCUCGUCgCCGCuacggaGGGCGAcGACGUgCCGa -3' miRNA: 3'- -CAGAGCAG-GGCG------CCCGCU-UUGCA-GGC- -5' |
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8988 | 5' | -58.3 | NC_002512.2 | + | 134746 | 0.78 | 0.333438 |
Target: 5'- -cCUCGaCCCGCcgGGGCGGAcCGUCCGg -3' miRNA: 3'- caGAGCaGGGCG--CCCGCUUuGCAGGC- -5' |
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8988 | 5' | -58.3 | NC_002512.2 | + | 80668 | 0.77 | 0.383561 |
Target: 5'- cGUCg-GUCCCGCggcggcggcgacggGGGCGAGcgGCGUCCGg -3' miRNA: 3'- -CAGagCAGGGCG--------------CCCGCUU--UGCAGGC- -5' |
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8988 | 5' | -58.3 | NC_002512.2 | + | 152322 | 0.76 | 0.401884 |
Target: 5'- -gCUCGgacgCCCGUGGGCGAcccgcCGUCCGc -3' miRNA: 3'- caGAGCa---GGGCGCCCGCUuu---GCAGGC- -5' |
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8988 | 5' | -58.3 | NC_002512.2 | + | 40052 | 0.76 | 0.401884 |
Target: 5'- cGUUUCG-CCCGCGGGaCGAGAC-UCCa -3' miRNA: 3'- -CAGAGCaGGGCGCCC-GCUUUGcAGGc -5' |
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8988 | 5' | -58.3 | NC_002512.2 | + | 107910 | 0.75 | 0.452199 |
Target: 5'- cUCUCGUCCCgccgGCGGGCGggGac-CCGg -3' miRNA: 3'- cAGAGCAGGG----CGCCCGCuuUgcaGGC- -5' |
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8988 | 5' | -58.3 | NC_002512.2 | + | 24699 | 0.75 | 0.460916 |
Target: 5'- gGUCUCGUCgaggaCGCGGGCGAGggagacgcgGCGUCg- -3' miRNA: 3'- -CAGAGCAGg----GCGCCCGCUU---------UGCAGgc -5' |
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8988 | 5' | -58.3 | NC_002512.2 | + | 45286 | 0.74 | 0.505762 |
Target: 5'- -gCUCGUCUCGCGGGUcGGACGgaccgCCGc -3' miRNA: 3'- caGAGCAGGGCGCCCGcUUUGCa----GGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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