miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8988 5' -58.3 NC_002512.2 + 189835 1.08 0.004163
Target:  5'- aGUCUCGUCCCGCGGGCGAAACGUCCGc -3'
miRNA:   3'- -CAGAGCAGGGCGCCCGCUUUGCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 218485 0.86 0.105753
Target:  5'- -cCUCGUCCCGCGGGuCGuccGCGUCCGa -3'
miRNA:   3'- caGAGCAGGGCGCCC-GCuu-UGCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 159053 0.79 0.273934
Target:  5'- aUCUCGUCCCG-GGGCGAGGCGgaCGa -3'
miRNA:   3'- cAGAGCAGGGCgCCCGCUUUGCagGC- -5'
8988 5' -58.3 NC_002512.2 + 57309 0.79 0.29277
Target:  5'- gGUCUCGUaCUCGCGGGCGcggagGAACGUCaCGc -3'
miRNA:   3'- -CAGAGCA-GGGCGCCCGC-----UUUGCAG-GC- -5'
8988 5' -58.3 NC_002512.2 + 21913 0.78 0.326381
Target:  5'- cGUCUCGUCgCCGCuacggaGGGCGAcGACGUgCCGa -3'
miRNA:   3'- -CAGAGCAG-GGCG------CCCGCU-UUGCA-GGC- -5'
8988 5' -58.3 NC_002512.2 + 134746 0.78 0.333438
Target:  5'- -cCUCGaCCCGCcgGGGCGGAcCGUCCGg -3'
miRNA:   3'- caGAGCaGGGCG--CCCGCUUuGCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 80668 0.77 0.383561
Target:  5'- cGUCg-GUCCCGCggcggcggcgacggGGGCGAGcgGCGUCCGg -3'
miRNA:   3'- -CAGagCAGGGCG--------------CCCGCUU--UGCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 204809 0.76 0.39385
Target:  5'- gGUCcgCGUCCCGgGGGCGcgGCGgcUCCGu -3'
miRNA:   3'- -CAGa-GCAGGGCgCCCGCuuUGC--AGGC- -5'
8988 5' -58.3 NC_002512.2 + 152322 0.76 0.401884
Target:  5'- -gCUCGgacgCCCGUGGGCGAcccgcCGUCCGc -3'
miRNA:   3'- caGAGCa---GGGCGCCCGCUuu---GCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 40052 0.76 0.401884
Target:  5'- cGUUUCG-CCCGCGGGaCGAGAC-UCCa -3'
miRNA:   3'- -CAGAGCaGGGCGCCC-GCUUUGcAGGc -5'
8988 5' -58.3 NC_002512.2 + 195053 0.75 0.443572
Target:  5'- ---gCGgCCCGCGGGCGGGAggguCGUCCGg -3'
miRNA:   3'- cagaGCaGGGCGCCCGCUUU----GCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 107910 0.75 0.452199
Target:  5'- cUCUCGUCCCgccgGCGGGCGggGac-CCGg -3'
miRNA:   3'- cAGAGCAGGG----CGCCCGCuuUgcaGGC- -5'
8988 5' -58.3 NC_002512.2 + 24699 0.75 0.460916
Target:  5'- gGUCUCGUCgaggaCGCGGGCGAGggagacgcgGCGUCg- -3'
miRNA:   3'- -CAGAGCAGg----GCGCCCGCUU---------UGCAGgc -5'
8988 5' -58.3 NC_002512.2 + 45286 0.74 0.505762
Target:  5'- -gCUCGUCUCGCGGGUcGGACGgaccgCCGc -3'
miRNA:   3'- caGAGCAGGGCGCCCGcUUUGCa----GGC- -5'
8988 5' -58.3 NC_002512.2 + 109189 0.74 0.524224
Target:  5'- cGUCUCGaugcgaaaccgCCCGCGGGCu---CGUCCGu -3'
miRNA:   3'- -CAGAGCa----------GGGCGCCCGcuuuGCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 193373 0.73 0.542936
Target:  5'- -gUUCGUCgCCGCGGGCGggGaCGacaCCGa -3'
miRNA:   3'- caGAGCAG-GGCGCCCGCuuU-GCa--GGC- -5'
8988 5' -58.3 NC_002512.2 + 159389 0.73 0.570441
Target:  5'- ----gGUCCCGCggcgucgGGGCGGAAgGUCCGg -3'
miRNA:   3'- cagagCAGGGCG-------CCCGCUUUgCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 96666 0.73 0.571396
Target:  5'- cUCcCGUCCuCGCuGGGCGGacGACGUCCc -3'
miRNA:   3'- cAGaGCAGG-GCG-CCCGCU--UUGCAGGc -5'
8988 5' -58.3 NC_002512.2 + 169102 0.72 0.600199
Target:  5'- -cCUCGUCCuCGCgGGGCGuucgGUCCGg -3'
miRNA:   3'- caGAGCAGG-GCG-CCCGCuuugCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 79585 0.72 0.60985
Target:  5'- gGUCUCGcUCCuccgccucuuCGCGGGCGGcAGCG-CCGg -3'
miRNA:   3'- -CAGAGC-AGG----------GCGCCCGCU-UUGCaGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.