Results 1 - 20 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8989 | 5' | -53.8 | NC_002512.2 | + | 104261 | 0.65 | 0.983936 |
Target: 5'- -gGUCGUGUgugGUCGccGCCGGCGucuuucucgcguccGGCGg -3' miRNA: 3'- caCAGCGCAa--UAGU--CGGCCGU--------------UCGUg -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 156298 | 0.66 | 0.982603 |
Target: 5'- -cGUCGUGaaGUCGGCCGuGUc-GCACg -3' miRNA: 3'- caCAGCGCaaUAGUCGGC-CGuuCGUG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 115187 | 0.66 | 0.982603 |
Target: 5'- cGUGgaaCGCGauggUGUgGGCCGcGCAGGC-Ca -3' miRNA: 3'- -CACa--GCGCa---AUAgUCGGC-CGUUCGuG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 18424 | 0.66 | 0.980556 |
Target: 5'- gGUGUCGgaucCGggG-CAGCCG-CAGGCGCc -3' miRNA: 3'- -CACAGC----GCaaUaGUCGGCcGUUCGUG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 198543 | 0.66 | 0.975931 |
Target: 5'- --cUCGUGgUcgUAGCCGGCcaGGGCGCu -3' miRNA: 3'- cacAGCGCaAuaGUCGGCCG--UUCGUG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 126482 | 0.66 | 0.975931 |
Target: 5'- -cGUCGCGUcgcccggAUCc-CCGGCGuugGGCGCg -3' miRNA: 3'- caCAGCGCAa------UAGucGGCCGU---UCGUG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 130142 | 0.66 | 0.975173 |
Target: 5'- gGUGUCGCGgccgCggggcccggcggcgGGCCGGCccgcgacGGCGCg -3' miRNA: 3'- -CACAGCGCaauaG--------------UCGGCCGu------UCGUG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 149256 | 0.66 | 0.973338 |
Target: 5'- -cGcCGCGga--CGGCCGGaCGGGUACg -3' miRNA: 3'- caCaGCGCaauaGUCGGCC-GUUCGUG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 210980 | 0.66 | 0.973338 |
Target: 5'- uGUGUCGCGccugcgUGGCCGcGCA-GUACg -3' miRNA: 3'- -CACAGCGCaaua--GUCGGC-CGUuCGUG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 223219 | 0.66 | 0.973338 |
Target: 5'- -cGgagCGCGUcc-CGGCCGGCucgguGCACu -3' miRNA: 3'- caCa--GCGCAauaGUCGGCCGuu---CGUG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 113041 | 0.66 | 0.973338 |
Target: 5'- ---aCGCGUgGUuguucgucaCGGCCGGC-AGCACg -3' miRNA: 3'- cacaGCGCAaUA---------GUCGGCCGuUCGUG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 174854 | 0.66 | 0.973338 |
Target: 5'- uGUGcUCGUGUgacUCAGaaGGCAgauuuGGCACa -3' miRNA: 3'- -CAC-AGCGCAau-AGUCggCCGU-----UCGUG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 121886 | 0.66 | 0.973338 |
Target: 5'- -gGUCGCGggGgacGCuCGGCGAcGCGCg -3' miRNA: 3'- caCAGCGCaaUaguCG-GCCGUU-CGUG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 199917 | 0.66 | 0.973338 |
Target: 5'- cUGUCGUccGUUcgCGGCCGGCcgcCGCu -3' miRNA: 3'- cACAGCG--CAAuaGUCGGCCGuucGUG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 82944 | 0.67 | 0.970548 |
Target: 5'- -cGUCGCGcuucaCGGCCaGCAGGuCGCg -3' miRNA: 3'- caCAGCGCaaua-GUCGGcCGUUC-GUG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 17442 | 0.67 | 0.970548 |
Target: 5'- --cUCGCGgcggUcgCGGCCGGCcGGCcCg -3' miRNA: 3'- cacAGCGCa---AuaGUCGGCCGuUCGuG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 96050 | 0.67 | 0.970548 |
Target: 5'- -aGUCGCGgaagC-GCCGGC-GGUACg -3' miRNA: 3'- caCAGCGCaauaGuCGGCCGuUCGUG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 94878 | 0.67 | 0.967864 |
Target: 5'- -cGUCGUGUaggaugucgguccacGUCAGCagcucucggGGCGAGCACa -3' miRNA: 3'- caCAGCGCAa--------------UAGUCGg--------CCGUUCGUG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 35455 | 0.67 | 0.967555 |
Target: 5'- -gGUCGCagaGUUGUUGGCUGGCGAcguGUAUg -3' miRNA: 3'- caCAGCG---CAAUAGUCGGCCGUU---CGUG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 2203 | 0.67 | 0.967555 |
Target: 5'- -cGUCGuCGUcucgGUC-GCCGGC-GGCGCc -3' miRNA: 3'- caCAGC-GCAa---UAGuCGGCCGuUCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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