miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8989 5' -53.8 NC_002512.2 + 104261 0.65 0.983936
Target:  5'- -gGUCGUGUgugGUCGccGCCGGCGucuuucucgcguccGGCGg -3'
miRNA:   3'- caCAGCGCAa--UAGU--CGGCCGU--------------UCGUg -5'
8989 5' -53.8 NC_002512.2 + 156298 0.66 0.982603
Target:  5'- -cGUCGUGaaGUCGGCCGuGUc-GCACg -3'
miRNA:   3'- caCAGCGCaaUAGUCGGC-CGuuCGUG- -5'
8989 5' -53.8 NC_002512.2 + 115187 0.66 0.982603
Target:  5'- cGUGgaaCGCGauggUGUgGGCCGcGCAGGC-Ca -3'
miRNA:   3'- -CACa--GCGCa---AUAgUCGGC-CGUUCGuG- -5'
8989 5' -53.8 NC_002512.2 + 18424 0.66 0.980556
Target:  5'- gGUGUCGgaucCGggG-CAGCCG-CAGGCGCc -3'
miRNA:   3'- -CACAGC----GCaaUaGUCGGCcGUUCGUG- -5'
8989 5' -53.8 NC_002512.2 + 198543 0.66 0.975931
Target:  5'- --cUCGUGgUcgUAGCCGGCcaGGGCGCu -3'
miRNA:   3'- cacAGCGCaAuaGUCGGCCG--UUCGUG- -5'
8989 5' -53.8 NC_002512.2 + 126482 0.66 0.975931
Target:  5'- -cGUCGCGUcgcccggAUCc-CCGGCGuugGGCGCg -3'
miRNA:   3'- caCAGCGCAa------UAGucGGCCGU---UCGUG- -5'
8989 5' -53.8 NC_002512.2 + 130142 0.66 0.975173
Target:  5'- gGUGUCGCGgccgCggggcccggcggcgGGCCGGCccgcgacGGCGCg -3'
miRNA:   3'- -CACAGCGCaauaG--------------UCGGCCGu------UCGUG- -5'
8989 5' -53.8 NC_002512.2 + 174854 0.66 0.973338
Target:  5'- uGUGcUCGUGUgacUCAGaaGGCAgauuuGGCACa -3'
miRNA:   3'- -CAC-AGCGCAau-AGUCggCCGU-----UCGUG- -5'
8989 5' -53.8 NC_002512.2 + 223219 0.66 0.973338
Target:  5'- -cGgagCGCGUcc-CGGCCGGCucgguGCACu -3'
miRNA:   3'- caCa--GCGCAauaGUCGGCCGuu---CGUG- -5'
8989 5' -53.8 NC_002512.2 + 199917 0.66 0.973338
Target:  5'- cUGUCGUccGUUcgCGGCCGGCcgcCGCu -3'
miRNA:   3'- cACAGCG--CAAuaGUCGGCCGuucGUG- -5'
8989 5' -53.8 NC_002512.2 + 210980 0.66 0.973338
Target:  5'- uGUGUCGCGccugcgUGGCCGcGCA-GUACg -3'
miRNA:   3'- -CACAGCGCaaua--GUCGGC-CGUuCGUG- -5'
8989 5' -53.8 NC_002512.2 + 149256 0.66 0.973338
Target:  5'- -cGcCGCGga--CGGCCGGaCGGGUACg -3'
miRNA:   3'- caCaGCGCaauaGUCGGCC-GUUCGUG- -5'
8989 5' -53.8 NC_002512.2 + 121886 0.66 0.973338
Target:  5'- -gGUCGCGggGgacGCuCGGCGAcGCGCg -3'
miRNA:   3'- caCAGCGCaaUaguCG-GCCGUU-CGUG- -5'
8989 5' -53.8 NC_002512.2 + 113041 0.66 0.973338
Target:  5'- ---aCGCGUgGUuguucgucaCGGCCGGC-AGCACg -3'
miRNA:   3'- cacaGCGCAaUA---------GUCGGCCGuUCGUG- -5'
8989 5' -53.8 NC_002512.2 + 82944 0.67 0.970548
Target:  5'- -cGUCGCGcuucaCGGCCaGCAGGuCGCg -3'
miRNA:   3'- caCAGCGCaaua-GUCGGcCGUUC-GUG- -5'
8989 5' -53.8 NC_002512.2 + 96050 0.67 0.970548
Target:  5'- -aGUCGCGgaagC-GCCGGC-GGUACg -3'
miRNA:   3'- caCAGCGCaauaGuCGGCCGuUCGUG- -5'
8989 5' -53.8 NC_002512.2 + 17442 0.67 0.970548
Target:  5'- --cUCGCGgcggUcgCGGCCGGCcGGCcCg -3'
miRNA:   3'- cacAGCGCa---AuaGUCGGCCGuUCGuG- -5'
8989 5' -53.8 NC_002512.2 + 94878 0.67 0.967864
Target:  5'- -cGUCGUGUaggaugucgguccacGUCAGCagcucucggGGCGAGCACa -3'
miRNA:   3'- caCAGCGCAa--------------UAGUCGg--------CCGUUCGUG- -5'
8989 5' -53.8 NC_002512.2 + 35455 0.67 0.967555
Target:  5'- -gGUCGCagaGUUGUUGGCUGGCGAcguGUAUg -3'
miRNA:   3'- caCAGCG---CAAUAGUCGGCCGUU---CGUG- -5'
8989 5' -53.8 NC_002512.2 + 2203 0.67 0.967555
Target:  5'- -cGUCGuCGUcucgGUC-GCCGGC-GGCGCc -3'
miRNA:   3'- caCAGC-GCAa---UAGuCGGCCGuUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.