miRNA display CGI


Results 41 - 60 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8990 3' -57.7 NC_002512.2 + 58123 0.66 0.931652
Target:  5'- -cGCGaCCGAGagcGAGGcgagAGGGCGAGGGCc -3'
miRNA:   3'- gcUGC-GGUUC---CUCC----UCUCGCUCUCGc -5'
8990 3' -57.7 NC_002512.2 + 41575 0.66 0.920368
Target:  5'- uCGGCGUCAucaucuucccugGGGAGGugcucaucacacguuAGuauauaaaagcuccaGGCGAGAGCGa -3'
miRNA:   3'- -GCUGCGGU------------UCCUCC---------------UC---------------UCGCUCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 212592 0.66 0.921437
Target:  5'- aCGACGCgauguccggagaCGAGGAGGAcGA-CGAGGacGCGg -3'
miRNA:   3'- -GCUGCG------------GUUCCUCCU-CUcGCUCU--CGC- -5'
8990 3' -57.7 NC_002512.2 + 75542 0.66 0.910347
Target:  5'- uCGACGCCGuGGcGGAGGaCGAcGAcGCGg -3'
miRNA:   3'- -GCUGCGGUuCCuCCUCUcGCU-CU-CGC- -5'
8990 3' -57.7 NC_002512.2 + 217591 0.66 0.904475
Target:  5'- gCGGCGCCGccucGGGGGucgucGGCGAcucGGGCGg -3'
miRNA:   3'- -GCUGCGGUu---CCUCCuc---UCGCU---CUCGC- -5'
8990 3' -57.7 NC_002512.2 + 227629 0.66 0.90685
Target:  5'- gCGGCGgCGAGGucAGGcgacGGAGCGcccggguccggaggaAGAGCGg -3'
miRNA:   3'- -GCUGCgGUUCC--UCC----UCUCGC---------------UCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 200 0.66 0.926655
Target:  5'- aGGgGCCcGGGcGGAGAG--GGAGCGg -3'
miRNA:   3'- gCUgCGGuUCCuCCUCUCgcUCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 67775 0.67 0.871953
Target:  5'- cCGGCGCCGGGGucgucGGuGAGCuGGccucAGCGg -3'
miRNA:   3'- -GCUGCGGUUCCu----CCuCUCGcUC----UCGC- -5'
8990 3' -57.7 NC_002512.2 + 24710 0.67 0.878869
Target:  5'- gGACGCgGgcgaGGGAGacgcggcgucGAGAGCGAcGGGCa -3'
miRNA:   3'- gCUGCGgU----UCCUC----------CUCUCGCU-CUCGc -5'
8990 3' -57.7 NC_002512.2 + 229323 0.67 0.885583
Target:  5'- gGAgGa-AAGGAGGAGAGgggaGGGAGCa -3'
miRNA:   3'- gCUgCggUUCCUCCUCUCg---CUCUCGc -5'
8990 3' -57.7 NC_002512.2 + 97327 0.67 0.885583
Target:  5'- --cCGCCGGGGucGAGGGCgGAGAGg- -3'
miRNA:   3'- gcuGCGGUUCCucCUCUCG-CUCUCgc -5'
8990 3' -57.7 NC_002512.2 + 63443 0.67 0.871953
Target:  5'- cCGGCGCCGucgcccccGGAGGAcGGCggggaaGAGGGCa -3'
miRNA:   3'- -GCUGCGGUu-------CCUCCUcUCG------CUCUCGc -5'
8990 3' -57.7 NC_002512.2 + 227115 0.67 0.871953
Target:  5'- gCGACGaCGgagugaaaagGGGaAGGGGAGCGGGAGg- -3'
miRNA:   3'- -GCUGCgGU----------UCC-UCCUCUCGCUCUCgc -5'
8990 3' -57.7 NC_002512.2 + 171979 0.67 0.898389
Target:  5'- aCGuccCGCCuuAGGAGGuGGGCGGGugaaAGCu -3'
miRNA:   3'- -GCu--GCGGu-UCCUCCuCUCGCUC----UCGc -5'
8990 3' -57.7 NC_002512.2 + 11719 0.67 0.885583
Target:  5'- cCGGCGuaCCGAGGcuacgGGGAcGAGgcCGGGAGCGa -3'
miRNA:   3'- -GCUGC--GGUUCC-----UCCU-CUC--GCUCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 169346 0.67 0.871953
Target:  5'- gGACGU--GGGAGGGGAcuggcauguggGUGGGAGCc -3'
miRNA:   3'- gCUGCGguUCCUCCUCU-----------CGCUCUCGc -5'
8990 3' -57.7 NC_002512.2 + 6320 0.67 0.864841
Target:  5'- gGugGCCGccgcccgcGGGGGGAccGGGCGcGGGGCc -3'
miRNA:   3'- gCugCGGU--------UCCUCCU--CUCGC-UCUCGc -5'
8990 3' -57.7 NC_002512.2 + 127892 0.67 0.898389
Target:  5'- cCGAC-CCucgAAGGucgcgaccguGGGAG-GCGAGGGCGg -3'
miRNA:   3'- -GCUGcGG---UUCC----------UCCUCuCGCUCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 91010 0.67 0.864119
Target:  5'- gGGCGUCGgaggcccaucagcGGGAuacGGGGAcugguGCGGGAGCGg -3'
miRNA:   3'- gCUGCGGU-------------UCCU---CCUCU-----CGCUCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 86679 0.67 0.885583
Target:  5'- aCGGCGCgCGAGGGGGAcGGCaccacccucguGcAGGGCGc -3'
miRNA:   3'- -GCUGCG-GUUCCUCCUcUCG-----------C-UCUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.