miRNA display CGI


Results 21 - 40 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8990 3' -57.7 NC_002512.2 + 52629 0.66 0.904475
Target:  5'- gGACuCCcugcGGGAGGAGcuggaGGCGAcgGAGCGg -3'
miRNA:   3'- gCUGcGGu---UCCUCCUC-----UCGCU--CUCGC- -5'
8990 3' -57.7 NC_002512.2 + 127443 0.66 0.924594
Target:  5'- gCGACGCCAugcggguccagcuGGAGGucGGGC-AGaAGCGg -3'
miRNA:   3'- -GCUGCGGUu------------CCUCCu-CUCGcUC-UCGC- -5'
8990 3' -57.7 NC_002512.2 + 41575 0.66 0.920368
Target:  5'- uCGGCGUCAucaucuucccugGGGAGGugcucaucacacguuAGuauauaaaagcuccaGGCGAGAGCGa -3'
miRNA:   3'- -GCUGCGGU------------UCCUCC---------------UC---------------UCGCUCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 12192 0.66 0.926655
Target:  5'- uCGACGCCGGcGGGGAaGAGCcAGcccaAGCGc -3'
miRNA:   3'- -GCUGCGGUUcCUCCU-CUCGcUC----UCGC- -5'
8990 3' -57.7 NC_002512.2 + 212592 0.66 0.921437
Target:  5'- aCGACGCgauguccggagaCGAGGAGGAcGA-CGAGGacGCGg -3'
miRNA:   3'- -GCUGCG------------GUUCCUCCU-CUcGCUCU--CGC- -5'
8990 3' -57.7 NC_002512.2 + 129283 0.66 0.931652
Target:  5'- gGAC-UgGGGGGGGGGGGaGGGAGCa -3'
miRNA:   3'- gCUGcGgUUCCUCCUCUCgCUCUCGc -5'
8990 3' -57.7 NC_002512.2 + 194756 0.66 0.931652
Target:  5'- gGGCGCCAGucgggaccuGGuccgcguccacGGGAacuccGAGCGGGAGCu -3'
miRNA:   3'- gCUGCGGUU---------CC-----------UCCU-----CUCGCUCUCGc -5'
8990 3' -57.7 NC_002512.2 + 97408 0.66 0.921437
Target:  5'- aCGACGCgGAGGccgGGGAGAGaCGcGcGCu -3'
miRNA:   3'- -GCUGCGgUUCC---UCCUCUC-GCuCuCGc -5'
8990 3' -57.7 NC_002512.2 + 91988 0.66 0.916001
Target:  5'- gGAC-CaCGuGGAGGAGAuCGAGAGCc -3'
miRNA:   3'- gCUGcG-GUuCCUCCUCUcGCUCUCGc -5'
8990 3' -57.7 NC_002512.2 + 205505 0.66 0.931652
Target:  5'- aCGGCGUCGcGGAGGAcGA-CGAcuucGAGCGc -3'
miRNA:   3'- -GCUGCGGUuCCUCCU-CUcGCU----CUCGC- -5'
8990 3' -57.7 NC_002512.2 + 200 0.66 0.926655
Target:  5'- aGGgGCCcGGGcGGAGAG--GGAGCGg -3'
miRNA:   3'- gCUgCGGuUCCuCCUCUCgcUCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 100045 0.66 0.904475
Target:  5'- --cCGCCGGGcGcuGAGAcGCGGGGGCGg -3'
miRNA:   3'- gcuGCGGUUC-CucCUCU-CGCUCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 7728 0.66 0.903876
Target:  5'- aGGCGUCGGgauagcgguccucGGGGGcGGAGCcGGGGCGg -3'
miRNA:   3'- gCUGCGGUU-------------CCUCC-UCUCGcUCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 123265 0.66 0.916001
Target:  5'- cCGGCGCCGcaugucGGAGGAcaugGAGCGccGGCu -3'
miRNA:   3'- -GCUGCGGUu-----CCUCCU----CUCGCucUCGc -5'
8990 3' -57.7 NC_002512.2 + 219318 0.66 0.926655
Target:  5'- ---gGCCAcGG-GGAGAGCGucGGCGu -3'
miRNA:   3'- gcugCGGUuCCuCCUCUCGCucUCGC- -5'
8990 3' -57.7 NC_002512.2 + 109 0.66 0.931162
Target:  5'- gGAgGCCGgcAGGAGGcggcagaGGAgGCGAGAGg- -3'
miRNA:   3'- gCUgCGGU--UCCUCC-------UCU-CGCUCUCgc -5'
8990 3' -57.7 NC_002512.2 + 47719 0.66 0.90685
Target:  5'- -cGCGCCGccucgcGGGAGGAGGGCucggaacagaucguGGAGCu -3'
miRNA:   3'- gcUGCGGU------UCCUCCUCUCGc-------------UCUCGc -5'
8990 3' -57.7 NC_002512.2 + 221849 0.66 0.931162
Target:  5'- gGGCGCCucGGGAccgGGAccucucgGAGCGGGuggGGCGa -3'
miRNA:   3'- gCUGCGGu-UCCU---CCU-------CUCGCUC---UCGC- -5'
8990 3' -57.7 NC_002512.2 + 101622 0.66 0.931162
Target:  5'- cCGGCGCCGggacgcgAGucgccgcucGAGGGGAGCGc-GGCGg -3'
miRNA:   3'- -GCUGCGGU-------UC---------CUCCUCUCGCucUCGC- -5'
8990 3' -57.7 NC_002512.2 + 88556 0.66 0.926655
Target:  5'- uCGAgGUgGAGGuGGAGAuaGUGGGAGaCGu -3'
miRNA:   3'- -GCUgCGgUUCCuCCUCU--CGCUCUC-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.