miRNA display CGI


Results 21 - 40 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8990 3' -57.7 NC_002512.2 + 11550 0.69 0.784124
Target:  5'- gGACGaggaCGAGGAGGAcgaGGGCuacgGGGAGCa -3'
miRNA:   3'- gCUGCg---GUUCCUCCU---CUCG----CUCUCGc -5'
8990 3' -57.7 NC_002512.2 + 11719 0.67 0.885583
Target:  5'- cCGGCGuaCCGAGGcuacgGGGAcGAGgcCGGGAGCGa -3'
miRNA:   3'- -GCUGC--GGUUCC-----UCCU-CUC--GCUCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 12192 0.66 0.926655
Target:  5'- uCGACGCCGGcGGGGAaGAGCcAGcccaAGCGc -3'
miRNA:   3'- -GCUGCGGUUcCUCCU-CUCGcUC----UCGC- -5'
8990 3' -57.7 NC_002512.2 + 13745 0.73 0.583525
Target:  5'- gCGACGCCGgugugagcgggaAGGAGaGGAGgGAGAGgGa -3'
miRNA:   3'- -GCUGCGGU------------UCCUCcUCUCgCUCUCgC- -5'
8990 3' -57.7 NC_002512.2 + 14345 0.7 0.719763
Target:  5'- cCGACgGCCAgcAGGAucucccGGAGGGCGGGAuCGa -3'
miRNA:   3'- -GCUG-CGGU--UCCU------CCUCUCGCUCUcGC- -5'
8990 3' -57.7 NC_002512.2 + 14414 0.68 0.815839
Target:  5'- aGGCGCC-AGGAGGAGucgacgccGGCGAugacccgcucccggGGGCu -3'
miRNA:   3'- gCUGCGGuUCCUCCUC--------UCGCU--------------CUCGc -5'
8990 3' -57.7 NC_002512.2 + 15098 0.66 0.931652
Target:  5'- -cGCGaCCAGGGGacccGGAGGGCGAccGGCGc -3'
miRNA:   3'- gcUGC-GGUUCCU----CCUCUCGCUc-UCGC- -5'
8990 3' -57.7 NC_002512.2 + 15179 0.67 0.881579
Target:  5'- gGGCGCUgagucagccuggggaAaauAGGGGaGAGAGCGGGAGgGc -3'
miRNA:   3'- gCUGCGG---------------U---UCCUC-CUCUCGCUCUCgC- -5'
8990 3' -57.7 NC_002512.2 + 15234 0.79 0.278712
Target:  5'- aGGCGCC-GGGAGGAGAgacuGCGAG-GCGg -3'
miRNA:   3'- gCUGCGGuUCCUCCUCU----CGCUCuCGC- -5'
8990 3' -57.7 NC_002512.2 + 21226 0.76 0.418495
Target:  5'- gGACGCCGcccGGGGcGGAGA-CGGGGGCGg -3'
miRNA:   3'- gCUGCGGU---UCCU-CCUCUcGCUCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 22070 0.68 0.842371
Target:  5'- aGACGCCGAGucGGGGuuCGgAGAGCu -3'
miRNA:   3'- gCUGCGGUUCcuCCUCucGC-UCUCGc -5'
8990 3' -57.7 NC_002512.2 + 22303 0.7 0.757133
Target:  5'- uCGcAgGCCAGGGAgaggGGAGAcGCGAGGGaCGc -3'
miRNA:   3'- -GC-UgCGGUUCCU----CCUCU-CGCUCUC-GC- -5'
8990 3' -57.7 NC_002512.2 + 22341 0.78 0.325466
Target:  5'- gGACGCgAGGGAGGAGucgcAGCGGGAGg- -3'
miRNA:   3'- gCUGCGgUUCCUCCUC----UCGCUCUCgc -5'
8990 3' -57.7 NC_002512.2 + 23562 0.67 0.89209
Target:  5'- cCGACguGCCAccuGGcguGGccgcuGGGCGAGAGCGa -3'
miRNA:   3'- -GCUG--CGGUu--CCu--CCu----CUCGCUCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 24710 0.67 0.878869
Target:  5'- gGACGCgGgcgaGGGAGacgcggcgucGAGAGCGAcGGGCa -3'
miRNA:   3'- gCUGCGgU----UCCUC----------CUCUCGCU-CUCGc -5'
8990 3' -57.7 NC_002512.2 + 25193 0.67 0.861942
Target:  5'- cCGACGUCGcguccgccgcgacGGAGcGGGAGCGAGccgccGGCGa -3'
miRNA:   3'- -GCUGCGGUu------------CCUC-CUCUCGCUC-----UCGC- -5'
8990 3' -57.7 NC_002512.2 + 26655 0.67 0.871953
Target:  5'- -aGCGCaCGAGGucGGGGGCGGGcucgaAGCGg -3'
miRNA:   3'- gcUGCG-GUUCCucCUCUCGCUC-----UCGC- -5'
8990 3' -57.7 NC_002512.2 + 27553 0.67 0.878869
Target:  5'- gGGCGCUAAGuagcguguAGGAGuGGCG-GAGCGg -3'
miRNA:   3'- gCUGCGGUUCc-------UCCUC-UCGCuCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 29745 0.67 0.864841
Target:  5'- gCGGCGCgCGAGGGGGcccGGCGAucGAcGCGa -3'
miRNA:   3'- -GCUGCG-GUUCCUCCuc-UCGCU--CU-CGC- -5'
8990 3' -57.7 NC_002512.2 + 30281 0.68 0.842371
Target:  5'- cCGGCGCCAuGGAGGAG-GCccccGCGu -3'
miRNA:   3'- -GCUGCGGUuCCUCCUCuCGcucuCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.