miRNA display CGI


Results 21 - 40 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8990 3' -57.7 NC_002512.2 + 228467 0.76 0.421865
Target:  5'- aGACGCCGAGGGGGAccGAGgGgaccgaagacgcggaGGGGCGa -3'
miRNA:   3'- gCUGCGGUUCCUCCU--CUCgC---------------UCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 204977 0.76 0.426949
Target:  5'- cCGACGCCGcgggcgacgGGGAccGGAaGGCGGGGGCGa -3'
miRNA:   3'- -GCUGCGGU---------UCCU--CCUcUCGCUCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 170798 0.76 0.426949
Target:  5'- aCGACGgCGGcGAGGGGAGCGAcggGGGCGg -3'
miRNA:   3'- -GCUGCgGUUcCUCCUCUCGCU---CUCGC- -5'
8990 3' -57.7 NC_002512.2 + 222337 0.75 0.444155
Target:  5'- gCGGCGCCuccagGAGGAGGAgGAGCGgcacGGGGCc -3'
miRNA:   3'- -GCUGCGG-----UUCCUCCU-CUCGC----UCUCGc -5'
8990 3' -57.7 NC_002512.2 + 227530 0.75 0.444155
Target:  5'- cCGGCGgCGgacgggGGGAGGAGGGCGGGuccGCGa -3'
miRNA:   3'- -GCUGCgGU------UCCUCCUCUCGCUCu--CGC- -5'
8990 3' -57.7 NC_002512.2 + 4618 0.75 0.444155
Target:  5'- gGACGCCGAGGAcgcccuccuggcGGAGAaggagcaCGGGAGCGg -3'
miRNA:   3'- gCUGCGGUUCCU------------CCUCUc------GCUCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 154006 0.75 0.452024
Target:  5'- gCGACGCCGgcAGGAGGAGgaauguaAGUGAuGGCGa -3'
miRNA:   3'- -GCUGCGGU--UCCUCCUC-------UCGCUcUCGC- -5'
8990 3' -57.7 NC_002512.2 + 229559 0.75 0.460856
Target:  5'- gGGCGCCGGcGGAGGAGcgcgcgccgggagGGaCGGGGGCGa -3'
miRNA:   3'- gCUGCGGUU-CCUCCUC-------------UC-GCUCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 156 0.75 0.460856
Target:  5'- gGGCGCCGGcGGAGGAGcgcgcgccgggagGGaCGGGGGCGa -3'
miRNA:   3'- gCUGCGGUU-CCUCCUC-------------UC-GCUCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 227985 0.75 0.461744
Target:  5'- cCGGCGCCGAGGGccGAGGGCcGGAGCc -3'
miRNA:   3'- -GCUGCGGUUCCUc-CUCUCGcUCUCGc -5'
8990 3' -57.7 NC_002512.2 + 4878 0.75 0.470675
Target:  5'- gCGGCGCCGgcuGGAGGAGcGGCGAcgggaagaGGGCGc -3'
miRNA:   3'- -GCUGCGGUu--CCUCCUC-UCGCU--------CUCGC- -5'
8990 3' -57.7 NC_002512.2 + 80684 0.75 0.479694
Target:  5'- gCGGCGaCGGGGGcgagcggcguccGGGGGGCGAGGGCGc -3'
miRNA:   3'- -GCUGCgGUUCCU------------CCUCUCGCUCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 227933 0.74 0.506307
Target:  5'- cCGACGCCGgcggacgAGGcGGGGGAGCGcgggGGAGCc -3'
miRNA:   3'- -GCUGCGGU-------UCC-UCCUCUCGC----UCUCGc -5'
8990 3' -57.7 NC_002512.2 + 5 0.74 0.507236
Target:  5'- aCGGCGCgCAcccGGGAGGAGAGgGGGgaaaaaagcgcaAGCGg -3'
miRNA:   3'- -GCUGCG-GU---UCCUCCUCUCgCUC------------UCGC- -5'
8990 3' -57.7 NC_002512.2 + 150552 0.74 0.507236
Target:  5'- aCGcCGCCGcgaccugggagGGGAGGAgGAGCGGGGcGCGg -3'
miRNA:   3'- -GCuGCGGU-----------UCCUCCU-CUCGCUCU-CGC- -5'
8990 3' -57.7 NC_002512.2 + 229409 0.74 0.507236
Target:  5'- aCGGCGCgCAcccGGGAGGAGAGgGGGgaaaaaagcgcaAGCGg -3'
miRNA:   3'- -GCUGCG-GU---UCCUCCUCUCgCUC------------UCGC- -5'
8990 3' -57.7 NC_002512.2 + 118119 0.74 0.507236
Target:  5'- cCGuauCGCUGAcGGGGGAGggGGCGGGGGCGg -3'
miRNA:   3'- -GCu--GCGGUU-CCUCCUC--UCGCUCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 226244 0.74 0.515631
Target:  5'- gGGgGCCGgaggaggAGGAGGAGAGgaGAGAGCu -3'
miRNA:   3'- gCUgCGGU-------UCCUCCUCUCg-CUCUCGc -5'
8990 3' -57.7 NC_002512.2 + 110268 0.74 0.535429
Target:  5'- -cGCGCUggGGcGGGAGgcgagcGGCGAGGGCGa -3'
miRNA:   3'- gcUGCGGuuCC-UCCUC------UCGCUCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 121867 0.74 0.54495
Target:  5'- gCGGCGgauCCGAGGGGGAGGucGCGGGGGaCGc -3'
miRNA:   3'- -GCUGC---GGUUCCUCCUCU--CGCUCUC-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.