miRNA display CGI


Results 1 - 20 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8990 3' -57.7 NC_002512.2 + 188828 1.1 0.003074
Target:  5'- aCGACGCCAAGGAGGAGAGCGAGAGCGa -3'
miRNA:   3'- -GCUGCGGUUCCUCCUCUCGCUCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 223888 0.93 0.039002
Target:  5'- gGAgGCCGAGGAGGAgGAGCGGGAGCGg -3'
miRNA:   3'- gCUgCGGUUCCUCCU-CUCGCUCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 123559 0.89 0.069012
Target:  5'- gGACGUCGAGGGGGAGAGCGAcGGGCu -3'
miRNA:   3'- gCUGCGGUUCCUCCUCUCGCU-CUCGc -5'
8990 3' -57.7 NC_002512.2 + 85545 0.83 0.158298
Target:  5'- aCGGCGCUggcggggcucGAGGAGGcgcgGGAGCGGGAGCGg -3'
miRNA:   3'- -GCUGCGG----------UUCCUCC----UCUCGCUCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 15234 0.79 0.278712
Target:  5'- aGGCGCC-GGGAGGAGAgacuGCGAG-GCGg -3'
miRNA:   3'- gCUGCGGuUCCUCCUCU----CGCUCuCGC- -5'
8990 3' -57.7 NC_002512.2 + 201752 0.78 0.311537
Target:  5'- gGGCGCCGaucccgggggacGGGAGGgacgAGGGUGAGAGCGc -3'
miRNA:   3'- gCUGCGGU------------UCCUCC----UCUCGCUCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 53850 0.78 0.311537
Target:  5'- gCGGCGCC-GGGAGGAGAGgGGGAcCGu -3'
miRNA:   3'- -GCUGCGGuUCCUCCUCUCgCUCUcGC- -5'
8990 3' -57.7 NC_002512.2 + 2060 0.78 0.325466
Target:  5'- gCGGCGCCAgcGGGAgcgcGGAGuccacgccgGGCGGGAGCGg -3'
miRNA:   3'- -GCUGCGGU--UCCU----CCUC---------UCGCUCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 22341 0.78 0.325466
Target:  5'- gGACGCgAGGGAGGAGucgcAGCGGGAGg- -3'
miRNA:   3'- gCUGCGgUUCCUCCUC----UCGCUCUCgc -5'
8990 3' -57.7 NC_002512.2 + 81917 0.78 0.332602
Target:  5'- -uGCGCCGuGGAGGGGgacgacgacGGCGAGGGCGg -3'
miRNA:   3'- gcUGCGGUuCCUCCUC---------UCGCUCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 93064 0.77 0.354694
Target:  5'- aGGCGCUGuaccGGGAcGAGAGCGAGAGCc -3'
miRNA:   3'- gCUGCGGU----UCCUcCUCUCGCUCUCGc -5'
8990 3' -57.7 NC_002512.2 + 98328 0.77 0.354694
Target:  5'- uCGGgGCCGGGGAcGGGGAG-GGGGGCGg -3'
miRNA:   3'- -GCUgCGGUUCCU-CCUCUCgCUCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 154560 0.77 0.362284
Target:  5'- uCGGuCGCCAuGGGGGGGcaggauaacGGCGAGGGCGa -3'
miRNA:   3'- -GCU-GCGGUuCCUCCUC---------UCGCUCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 109794 0.77 0.369211
Target:  5'- gGGCGCCAGGG-GGAGGGCGAacaggaucagucuGAGgGg -3'
miRNA:   3'- gCUGCGGUUCCuCCUCUCGCU-------------CUCgC- -5'
8990 3' -57.7 NC_002512.2 + 38043 0.76 0.393757
Target:  5'- gGACGCC--GGAGGGGuGgGAGGGCGc -3'
miRNA:   3'- gCUGCGGuuCCUCCUCuCgCUCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 11337 0.76 0.393757
Target:  5'- gGACGCC-GGcGGGAG-GCGAGAGCGc -3'
miRNA:   3'- gCUGCGGuUCcUCCUCuCGCUCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 228417 0.76 0.393757
Target:  5'- gGGCGCUggGGGGcGGGGGCGggaacggggaGGAGCGg -3'
miRNA:   3'- gCUGCGGuuCCUC-CUCUCGC----------UCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 221613 0.76 0.401078
Target:  5'- gGACGgCGAGGAGG-GAGCGGGuccacccGGCGg -3'
miRNA:   3'- gCUGCgGUUCCUCCuCUCGCUC-------UCGC- -5'
8990 3' -57.7 NC_002512.2 + 107399 0.76 0.417655
Target:  5'- aCGACGCUGAGGGGGAucuucugGAGCGAGuuggGGUGc -3'
miRNA:   3'- -GCUGCGGUUCCUCCU-------CUCGCUC----UCGC- -5'
8990 3' -57.7 NC_002512.2 + 21226 0.76 0.418495
Target:  5'- gGACGCCGcccGGGGcGGAGA-CGGGGGCGg -3'
miRNA:   3'- gCUGCGGU---UCCU-CCUCUcGCUCUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.