Results 1 - 20 of 248 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8990 | 3' | -57.7 | NC_002512.2 | + | 34930 | 0.73 | 0.554526 |
Target: 5'- aCGACGgCGGGGucgcggcgacGGGGAGCG-GAGCGg -3' miRNA: 3'- -GCUGCgGUUCCu---------CCUCUCGCuCUCGC- -5' |
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8990 | 3' | -57.7 | NC_002512.2 | + | 21226 | 0.76 | 0.418495 |
Target: 5'- gGACGCCGcccGGGGcGGAGA-CGGGGGCGg -3' miRNA: 3'- gCUGCGGU---UCCU-CCUCUcGCUCUCGC- -5' |
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8990 | 3' | -57.7 | NC_002512.2 | + | 4618 | 0.75 | 0.444155 |
Target: 5'- gGACGCCGAGGAcgcccuccuggcGGAGAaggagcaCGGGAGCGg -3' miRNA: 3'- gCUGCGGUUCCU------------CCUCUc------GCUCUCGC- -5' |
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8990 | 3' | -57.7 | NC_002512.2 | + | 154006 | 0.75 | 0.452024 |
Target: 5'- gCGACGCCGgcAGGAGGAGgaauguaAGUGAuGGCGa -3' miRNA: 3'- -GCUGCGGU--UCCUCCUC-------UCGCUcUCGC- -5' |
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8990 | 3' | -57.7 | NC_002512.2 | + | 4878 | 0.75 | 0.470675 |
Target: 5'- gCGGCGCCGgcuGGAGGAGcGGCGAcgggaagaGGGCGc -3' miRNA: 3'- -GCUGCGGUu--CCUCCUC-UCGCU--------CUCGC- -5' |
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8990 | 3' | -57.7 | NC_002512.2 | + | 80684 | 0.75 | 0.479694 |
Target: 5'- gCGGCGaCGGGGGcgagcggcguccGGGGGGCGAGGGCGc -3' miRNA: 3'- -GCUGCgGUUCCU------------CCUCUCGCUCUCGC- -5' |
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8990 | 3' | -57.7 | NC_002512.2 | + | 118119 | 0.74 | 0.507236 |
Target: 5'- cCGuauCGCUGAcGGGGGAGggGGCGGGGGCGg -3' miRNA: 3'- -GCu--GCGGUU-CCUCCUC--UCGCUCUCGC- -5' |
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8990 | 3' | -57.7 | NC_002512.2 | + | 110268 | 0.74 | 0.535429 |
Target: 5'- -cGCGCUggGGcGGGAGgcgagcGGCGAGGGCGa -3' miRNA: 3'- gcUGCGGuuCC-UCCUC------UCGCUCUCGC- -5' |
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8990 | 3' | -57.7 | NC_002512.2 | + | 121867 | 0.74 | 0.54495 |
Target: 5'- gCGGCGgauCCGAGGGGGAGGucGCGGGGGaCGc -3' miRNA: 3'- -GCUGC---GGUUCCUCCUCU--CGCUCUC-GC- -5' |
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8990 | 3' | -57.7 | NC_002512.2 | + | 38043 | 0.76 | 0.393757 |
Target: 5'- gGACGCC--GGAGGGGuGgGAGGGCGc -3' miRNA: 3'- gCUGCGGuuCCUCCUCuCgCUCUCGC- -5' |
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8990 | 3' | -57.7 | NC_002512.2 | + | 11337 | 0.76 | 0.393757 |
Target: 5'- gGACGCC-GGcGGGAG-GCGAGAGCGc -3' miRNA: 3'- gCUGCGGuUCcUCCUCuCGCUCUCGC- -5' |
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8990 | 3' | -57.7 | NC_002512.2 | + | 109794 | 0.77 | 0.369211 |
Target: 5'- gGGCGCCAGGG-GGAGGGCGAacaggaucagucuGAGgGg -3' miRNA: 3'- gCUGCGGUUCCuCCUCUCGCU-------------CUCgC- -5' |
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8990 | 3' | -57.7 | NC_002512.2 | + | 85545 | 0.83 | 0.158298 |
Target: 5'- aCGGCGCUggcggggcucGAGGAGGcgcgGGAGCGGGAGCGg -3' miRNA: 3'- -GCUGCGG----------UUCCUCC----UCUCGCUCUCGC- -5' |
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8990 | 3' | -57.7 | NC_002512.2 | + | 15234 | 0.79 | 0.278712 |
Target: 5'- aGGCGCC-GGGAGGAGAgacuGCGAG-GCGg -3' miRNA: 3'- gCUGCGGuUCCUCCUCU----CGCUCuCGC- -5' |
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8990 | 3' | -57.7 | NC_002512.2 | + | 53850 | 0.78 | 0.311537 |
Target: 5'- gCGGCGCC-GGGAGGAGAGgGGGAcCGu -3' miRNA: 3'- -GCUGCGGuUCCUCCUCUCgCUCUcGC- -5' |
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8990 | 3' | -57.7 | NC_002512.2 | + | 22341 | 0.78 | 0.325466 |
Target: 5'- gGACGCgAGGGAGGAGucgcAGCGGGAGg- -3' miRNA: 3'- gCUGCGgUUCCUCCUC----UCGCUCUCgc -5' |
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8990 | 3' | -57.7 | NC_002512.2 | + | 2060 | 0.78 | 0.325466 |
Target: 5'- gCGGCGCCAgcGGGAgcgcGGAGuccacgccgGGCGGGAGCGg -3' miRNA: 3'- -GCUGCGGU--UCCU----CCUC---------UCGCUCUCGC- -5' |
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8990 | 3' | -57.7 | NC_002512.2 | + | 81917 | 0.78 | 0.332602 |
Target: 5'- -uGCGCCGuGGAGGGGgacgacgacGGCGAGGGCGg -3' miRNA: 3'- gcUGCGGUuCCUCCUC---------UCGCUCUCGC- -5' |
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8990 | 3' | -57.7 | NC_002512.2 | + | 98328 | 0.77 | 0.354694 |
Target: 5'- uCGGgGCCGGGGAcGGGGAG-GGGGGCGg -3' miRNA: 3'- -GCUgCGGUUCCU-CCUCUCgCUCUCGC- -5' |
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8990 | 3' | -57.7 | NC_002512.2 | + | 154560 | 0.77 | 0.362284 |
Target: 5'- uCGGuCGCCAuGGGGGGGcaggauaacGGCGAGGGCGa -3' miRNA: 3'- -GCU-GCGGUuCCUCCUC---------UCGCUCUCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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