miRNA display CGI


Results 1 - 20 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8990 3' -57.7 NC_002512.2 + 205505 0.66 0.931652
Target:  5'- aCGGCGUCGcGGAGGAcGA-CGAcuucGAGCGc -3'
miRNA:   3'- -GCUGCGGUuCCUCCU-CUcGCU----CUCGC- -5'
8990 3' -57.7 NC_002512.2 + 148496 0.66 0.916001
Target:  5'- aGAagGCCGGGGAcGGGGA-CGAGgaGGCGg -3'
miRNA:   3'- gCUg-CGGUUCCU-CCUCUcGCUC--UCGC- -5'
8990 3' -57.7 NC_002512.2 + 130433 0.66 0.912634
Target:  5'- aGAcCGCCAuccAGGccuuccAGGucgugucguccgacaGGAGCGGGGGCGg -3'
miRNA:   3'- gCU-GCGGU---UCC------UCC---------------UCUCGCUCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 188828 1.1 0.003074
Target:  5'- aCGACGCCAAGGAGGAGAGCGAGAGCGa -3'
miRNA:   3'- -GCUGCGGUUCCUCCUCUCGCUCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 194756 0.66 0.931652
Target:  5'- gGGCGCCAGucgggaccuGGuccgcguccacGGGAacuccGAGCGGGAGCu -3'
miRNA:   3'- gCUGCGGUU---------CC-----------UCCU-----CUCGCUCUCGc -5'
8990 3' -57.7 NC_002512.2 + 221849 0.66 0.931162
Target:  5'- gGGCGCCucGGGAccgGGAccucucgGAGCGGGuggGGCGa -3'
miRNA:   3'- gCUGCGGu-UCCU---CCU-------CUCGCUC---UCGC- -5'
8990 3' -57.7 NC_002512.2 + 241 0.66 0.930176
Target:  5'- gGGCGggaaaaGGGGAGaGAGAGCGggaaaaggggagagAGAGCGg -3'
miRNA:   3'- gCUGCgg----UUCCUC-CUCUCGC--------------UCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 219786 0.66 0.926655
Target:  5'- cCGGCccgGCCGGGGAcacagauaGGGGAcGCGcGGGGCGc -3'
miRNA:   3'- -GCUG---CGGUUCCU--------CCUCU-CGC-UCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 229603 0.66 0.926655
Target:  5'- aGGgGCCcGGGcGGAGAG--GGAGCGg -3'
miRNA:   3'- gCUgCGGuUCCuCCUCUCgcUCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 41575 0.66 0.920368
Target:  5'- uCGGCGUCAucaucuucccugGGGAGGugcucaucacacguuAGuauauaaaagcuccaGGCGAGAGCGa -3'
miRNA:   3'- -GCUGCGGU------------UCCUCC---------------UC---------------UCGCUCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 212592 0.66 0.921437
Target:  5'- aCGACGCgauguccggagaCGAGGAGGAcGA-CGAGGacGCGg -3'
miRNA:   3'- -GCUGCG------------GUUCCUCCU-CUcGCUCU--CGC- -5'
8990 3' -57.7 NC_002512.2 + 211136 0.66 0.926655
Target:  5'- uCGAgGCCGAGGAccuGGGCGucauccAGGGCGu -3'
miRNA:   3'- -GCUgCGGUUCCUccuCUCGC------UCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 196899 0.66 0.931652
Target:  5'- aCGGCGUCAuGGccagccucauGGAGGcCGAGAGCa -3'
miRNA:   3'- -GCUGCGGUuCCu---------CCUCUcGCUCUCGc -5'
8990 3' -57.7 NC_002512.2 + 101450 0.66 0.921437
Target:  5'- gCGACGCCGAGaGcGGGGGGGUGGacaccGGCc -3'
miRNA:   3'- -GCUGCGGUUC-C-UCCUCUCGCUc----UCGc -5'
8990 3' -57.7 NC_002512.2 + 190399 0.66 0.931652
Target:  5'- aCGGCuucGCCGAGuucugucgccGGGGGcuGCGGGAGCGg -3'
miRNA:   3'- -GCUG---CGGUUC----------CUCCUcuCGCUCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 219318 0.66 0.926655
Target:  5'- ---gGCCAcGG-GGAGAGCGucGGCGu -3'
miRNA:   3'- gcugCGGUuCCuCCUCUCGCucUCGC- -5'
8990 3' -57.7 NC_002512.2 + 39350 0.66 0.921437
Target:  5'- gCGugGCCucAGGAgaguccguGGAGGGUaGAGGGUa -3'
miRNA:   3'- -GCugCGGu-UCCU--------CCUCUCG-CUCUCGc -5'
8990 3' -57.7 NC_002512.2 + 91988 0.66 0.916001
Target:  5'- gGAC-CaCGuGGAGGAGAuCGAGAGCc -3'
miRNA:   3'- gCUGcG-GUuCCUCCUCUcGCUCUCGc -5'
8990 3' -57.7 NC_002512.2 + 129283 0.66 0.931652
Target:  5'- gGAC-UgGGGGGGGGGGGaGGGAGCa -3'
miRNA:   3'- gCUGcGgUUCCUCCUCUCgCUCUCGc -5'
8990 3' -57.7 NC_002512.2 + 229644 0.66 0.930176
Target:  5'- gGGCGggaaaaGGGGAGaGAGAGCGggaaaaggggagagAGAGCGg -3'
miRNA:   3'- gCUGCgg----UUCCUC-CUCUCGC--------------UCUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.