miRNA display CGI


Results 1 - 20 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8990 3' -57.7 NC_002512.2 + 78708 0.66 0.916001
Target:  5'- aGGCuCCGAGaGGGaGAGAGCGGGcggGGCu -3'
miRNA:   3'- gCUGcGGUUC-CUC-CUCUCGCUC---UCGc -5'
8990 3' -57.7 NC_002512.2 + 100045 0.66 0.904475
Target:  5'- --cCGCCGGGcGcuGAGAcGCGGGGGCGg -3'
miRNA:   3'- gcuGCGGUUC-CucCUCU-CGCUCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 155367 0.66 0.903876
Target:  5'- gCGGCGCuCGAGGucGGGGcGGCGGcgccggcGGGCGa -3'
miRNA:   3'- -GCUGCG-GUUCCu-CCUC-UCGCU-------CUCGC- -5'
8990 3' -57.7 NC_002512.2 + 58123 0.66 0.931652
Target:  5'- -cGCGaCCGAGagcGAGGcgagAGGGCGAGGGCc -3'
miRNA:   3'- gcUGC-GGUUC---CUCC----UCUCGCUCUCGc -5'
8990 3' -57.7 NC_002512.2 + 101622 0.66 0.931162
Target:  5'- cCGGCGCCGggacgcgAGucgccgcucGAGGGGAGCGc-GGCGg -3'
miRNA:   3'- -GCUGCGGU-------UC---------CUCCUCUCGCucUCGC- -5'
8990 3' -57.7 NC_002512.2 + 12192 0.66 0.926655
Target:  5'- uCGACGCCGGcGGGGAaGAGCcAGcccaAGCGc -3'
miRNA:   3'- -GCUGCGGUUcCUCCU-CUCGcUC----UCGC- -5'
8990 3' -57.7 NC_002512.2 + 88556 0.66 0.926655
Target:  5'- uCGAgGUgGAGGuGGAGAuaGUGGGAGaCGu -3'
miRNA:   3'- -GCUgCGgUUCCuCCUCU--CGCUCUC-GC- -5'
8990 3' -57.7 NC_002512.2 + 97408 0.66 0.921437
Target:  5'- aCGACGCgGAGGccgGGGAGAGaCGcGcGCu -3'
miRNA:   3'- -GCUGCGgUUCC---UCCUCUC-GCuCuCGc -5'
8990 3' -57.7 NC_002512.2 + 154793 0.66 0.926655
Target:  5'- ---gGCUc-GGAGG-GAGCGGGAGUGa -3'
miRNA:   3'- gcugCGGuuCCUCCuCUCGCUCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 7728 0.66 0.903876
Target:  5'- aGGCGUCGGgauagcgguccucGGGGGcGGAGCcGGGGCGg -3'
miRNA:   3'- gCUGCGGUU-------------CCUCC-UCUCGcUCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 127443 0.66 0.924594
Target:  5'- gCGACGCCAugcggguccagcuGGAGGucGGGC-AGaAGCGg -3'
miRNA:   3'- -GCUGCGGUu------------CCUCCu-CUCGcUC-UCGC- -5'
8990 3' -57.7 NC_002512.2 + 47719 0.66 0.90685
Target:  5'- -cGCGCCGccucgcGGGAGGAGGGCucggaacagaucguGGAGCu -3'
miRNA:   3'- gcUGCGGU------UCCUCCUCUCGc-------------UCUCGc -5'
8990 3' -57.7 NC_002512.2 + 52629 0.66 0.904475
Target:  5'- gGACuCCcugcGGGAGGAGcuggaGGCGAcgGAGCGg -3'
miRNA:   3'- gCUGcGGu---UCCUCCUC-----UCGCU--CUCGC- -5'
8990 3' -57.7 NC_002512.2 + 49170 0.66 0.916001
Target:  5'- uGACGCUGAGGGaccuGuGCGAcGAGCGg -3'
miRNA:   3'- gCUGCGGUUCCUccu-CuCGCU-CUCGC- -5'
8990 3' -57.7 NC_002512.2 + 229513 0.66 0.926143
Target:  5'- gGAgGCCGgcAGGAGGcggcagaGGAGgGAGAGg- -3'
miRNA:   3'- gCUgCGGU--UCCUCC-------UCUCgCUCUCgc -5'
8990 3' -57.7 NC_002512.2 + 15098 0.66 0.931652
Target:  5'- -cGCGaCCAGGGGacccGGAGGGCGAccGGCGc -3'
miRNA:   3'- gcUGC-GGUUCCU----CCUCUCGCUc-UCGC- -5'
8990 3' -57.7 NC_002512.2 + 108366 0.66 0.916001
Target:  5'- gGGCggGUgGGGGAucgGGAGGGCGgGGGGCGa -3'
miRNA:   3'- gCUG--CGgUUCCU---CCUCUCGC-UCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 133392 0.66 0.915446
Target:  5'- gCGGuCGCCc-GGAccauGGAGGGCGAGAcggccgcGCGg -3'
miRNA:   3'- -GCU-GCGGuuCCU----CCUCUCGCUCU-------CGC- -5'
8990 3' -57.7 NC_002512.2 + 123265 0.66 0.916001
Target:  5'- cCGGCGCCGcaugucGGAGGAcaugGAGCGccGGCu -3'
miRNA:   3'- -GCUGCGGUu-----CCUCCU----CUCGCucUCGc -5'
8990 3' -57.7 NC_002512.2 + 109 0.66 0.931162
Target:  5'- gGAgGCCGgcAGGAGGcggcagaGGAgGCGAGAGg- -3'
miRNA:   3'- gCUgCGGU--UCCUCC-------UCU-CGCUCUCgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.