miRNA display CGI


Results 1 - 20 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8990 3' -57.7 NC_002512.2 + 5 0.74 0.507236
Target:  5'- aCGGCGCgCAcccGGGAGGAGAGgGGGgaaaaaagcgcaAGCGg -3'
miRNA:   3'- -GCUGCG-GU---UCCUCCUCUCgCUC------------UCGC- -5'
8990 3' -57.7 NC_002512.2 + 62 0.68 0.826504
Target:  5'- gCGGCGUCGgucgcGGGcgcgAGGAG-GCGAGAGgCGg -3'
miRNA:   3'- -GCUGCGGU-----UCC----UCCUCuCGCUCUC-GC- -5'
8990 3' -57.7 NC_002512.2 + 109 0.66 0.931162
Target:  5'- gGAgGCCGgcAGGAGGcggcagaGGAgGCGAGAGg- -3'
miRNA:   3'- gCUgCGGU--UCCUCC-------UCU-CGCUCUCgc -5'
8990 3' -57.7 NC_002512.2 + 156 0.75 0.460856
Target:  5'- gGGCGCCGGcGGAGGAGcgcgcgccgggagGGaCGGGGGCGa -3'
miRNA:   3'- gCUGCGGUU-CCUCCUC-------------UC-GCUCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 170 0.68 0.818324
Target:  5'- aGGCGgCAgAGGAggccGGAGGGCGuGGGCu -3'
miRNA:   3'- gCUGCgGU-UCCU----CCUCUCGCuCUCGc -5'
8990 3' -57.7 NC_002512.2 + 200 0.66 0.926655
Target:  5'- aGGgGCCcGGGcGGAGAG--GGAGCGg -3'
miRNA:   3'- gCUgCGGuUCCuCCUCUCgcUCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 241 0.66 0.930176
Target:  5'- gGGCGggaaaaGGGGAGaGAGAGCGggaaaaggggagagAGAGCGg -3'
miRNA:   3'- gCUGCgg----UUCCUC-CUCUCGC--------------UCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 2060 0.78 0.325466
Target:  5'- gCGGCGCCAgcGGGAgcgcGGAGuccacgccgGGCGGGAGCGg -3'
miRNA:   3'- -GCUGCGGU--UCCU----CCUC---------UCGCUCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 4199 0.68 0.826504
Target:  5'- gGACGCCGgagaucgguGGGAgcggccgcGGGGAGCGGGAcGuCGa -3'
miRNA:   3'- gCUGCGGU---------UCCU--------CCUCUCGCUCU-C-GC- -5'
8990 3' -57.7 NC_002512.2 + 4493 0.69 0.775242
Target:  5'- cCGGCGCCGuccccgaagAGGAuGGAc-GCGAGGGUGg -3'
miRNA:   3'- -GCUGCGGU---------UCCU-CCUcuCGCUCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 4618 0.75 0.444155
Target:  5'- gGACGCCGAGGAcgcccuccuggcGGAGAaggagcaCGGGAGCGg -3'
miRNA:   3'- gCUGCGGUUCCU------------CCUCUc------GCUCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 4878 0.75 0.470675
Target:  5'- gCGGCGCCGgcuGGAGGAGcGGCGAcgggaagaGGGCGc -3'
miRNA:   3'- -GCUGCGGUu--CCUCCUC-UCGCU--------CUCGC- -5'
8990 3' -57.7 NC_002512.2 + 6214 0.71 0.710228
Target:  5'- uCGGCGCCcuuGGAGGAGccccagaugcAGacCGAGAGCa -3'
miRNA:   3'- -GCUGCGGuu-CCUCCUC----------UC--GCUCUCGc -5'
8990 3' -57.7 NC_002512.2 + 6320 0.67 0.864841
Target:  5'- gGugGCCGccgcccgcGGGGGGAccGGGCGcGGGGCc -3'
miRNA:   3'- gCugCGGU--------UCCUCCU--CUCGC-UCUCGc -5'
8990 3' -57.7 NC_002512.2 + 7728 0.66 0.903876
Target:  5'- aGGCGUCGGgauagcgguccucGGGGGcGGAGCcGGGGCGg -3'
miRNA:   3'- gCUGCGGUU-------------CCUCC-UCUCGcUCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 9738 0.67 0.871953
Target:  5'- aCGACGCCcuuGGGGGc-GGCG-GAGCc -3'
miRNA:   3'- -GCUGCGGuu-CCUCCucUCGCuCUCGc -5'
8990 3' -57.7 NC_002512.2 + 9888 0.7 0.766242
Target:  5'- uCGAccCGCCGGGcGAgGGGGAGCGAGGucccGCa -3'
miRNA:   3'- -GCU--GCGGUUC-CU-CCUCUCGCUCU----CGc -5'
8990 3' -57.7 NC_002512.2 + 10454 0.71 0.68711
Target:  5'- gGGCGCgGAGGAGGccgccgccgccccGGGCGuGGGCGu -3'
miRNA:   3'- gCUGCGgUUCCUCCu------------CUCGCuCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 11337 0.76 0.393757
Target:  5'- gGACGCC-GGcGGGAG-GCGAGAGCGc -3'
miRNA:   3'- gCUGCGGuUCcUCCUCuCGCUCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 11445 0.67 0.885583
Target:  5'- gGACGCCGcGGAcGGGGGCcggggaaGGGGCGg -3'
miRNA:   3'- gCUGCGGUuCCUcCUCUCGc------UCUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.