miRNA display CGI


Results 1 - 20 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8990 3' -57.7 NC_002512.2 + 229644 0.66 0.930176
Target:  5'- gGGCGggaaaaGGGGAGaGAGAGCGggaaaaggggagagAGAGCGg -3'
miRNA:   3'- gCUGCgg----UUCCUC-CUCUCGC--------------UCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 229603 0.66 0.926655
Target:  5'- aGGgGCCcGGGcGGAGAG--GGAGCGg -3'
miRNA:   3'- gCUgCGGuUCCuCCUCUCgcUCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 229573 0.68 0.818324
Target:  5'- aGGCGgCAgAGGAggccGGAGGGCGuGGGCu -3'
miRNA:   3'- gCUGCgGU-UCCU----CCUCUCGCuCUCGc -5'
8990 3' -57.7 NC_002512.2 + 229559 0.75 0.460856
Target:  5'- gGGCGCCGGcGGAGGAGcgcgcgccgggagGGaCGGGGGCGa -3'
miRNA:   3'- gCUGCGGUU-CCUCCUC-------------UC-GCUCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 229513 0.66 0.926143
Target:  5'- gGAgGCCGgcAGGAGGcggcagaGGAGgGAGAGg- -3'
miRNA:   3'- gCUgCGGU--UCCUCC-------UCUCgCUCUCgc -5'
8990 3' -57.7 NC_002512.2 + 229466 0.68 0.826504
Target:  5'- gCGGCGUCGgucgcGGGcgcgAGGAG-GCGAGAGgCGg -3'
miRNA:   3'- -GCUGCGGU-----UCC----UCCUCuCGCUCUC-GC- -5'
8990 3' -57.7 NC_002512.2 + 229409 0.74 0.507236
Target:  5'- aCGGCGCgCAcccGGGAGGAGAGgGGGgaaaaaagcgcaAGCGg -3'
miRNA:   3'- -GCUGCG-GU---UCCUCCUCUCgCUC------------UCGC- -5'
8990 3' -57.7 NC_002512.2 + 229356 0.67 0.885583
Target:  5'- aGGCGa-AAGGGGGAaggaagugGGGCGGGAGgGg -3'
miRNA:   3'- gCUGCggUUCCUCCU--------CUCGCUCUCgC- -5'
8990 3' -57.7 NC_002512.2 + 229323 0.67 0.885583
Target:  5'- gGAgGa-AAGGAGGAGAGgggaGGGAGCa -3'
miRNA:   3'- gCUgCggUUCCUCCUCUCg---CUCUCGc -5'
8990 3' -57.7 NC_002512.2 + 229087 0.71 0.690983
Target:  5'- aGAgGUgGAGGAGGGGAagagGgGAGAGUGa -3'
miRNA:   3'- gCUgCGgUUCCUCCUCU----CgCUCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 229015 0.67 0.864841
Target:  5'- gGAgG-CGAGaGAGGAGAGCGgacggcGGAGCa -3'
miRNA:   3'- gCUgCgGUUC-CUCCUCUCGC------UCUCGc -5'
8990 3' -57.7 NC_002512.2 + 228997 0.7 0.729229
Target:  5'- cCGugGCgGcgggacuagcGGGAGGAGGGUGuGcAGCGg -3'
miRNA:   3'- -GCugCGgU----------UCCUCCUCUCGCuC-UCGC- -5'
8990 3' -57.7 NC_002512.2 + 228947 0.71 0.671558
Target:  5'- gCGAgGCgAGGaGAGGAGAGgggcgGAGGGCGg -3'
miRNA:   3'- -GCUgCGgUUC-CUCCUCUCg----CUCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 228894 0.7 0.729229
Target:  5'- aGcACGgCAGGGAGGAGGacgacGCGAGAGa- -3'
miRNA:   3'- gC-UGCgGUUCCUCCUCU-----CGCUCUCgc -5'
8990 3' -57.7 NC_002512.2 + 228784 0.71 0.661798
Target:  5'- aCGGCGgagaCGGGaGAGGAGAGgGAGGGaCGg -3'
miRNA:   3'- -GCUGCg---GUUC-CUCCUCUCgCUCUC-GC- -5'
8990 3' -57.7 NC_002512.2 + 228730 0.71 0.671558
Target:  5'- aGACGUgaugCGGGGuAGGGGAGUGAGAGa- -3'
miRNA:   3'- gCUGCG----GUUCC-UCCUCUCGCUCUCgc -5'
8990 3' -57.7 NC_002512.2 + 228514 0.68 0.818324
Target:  5'- gGACGC---GGAGGAGAGaCGGaGGCGa -3'
miRNA:   3'- gCUGCGguuCCUCCUCUC-GCUcUCGC- -5'
8990 3' -57.7 NC_002512.2 + 228467 0.76 0.421865
Target:  5'- aGACGCCGAGGGGGAccGAGgGgaccgaagacgcggaGGGGCGa -3'
miRNA:   3'- gCUGCGGUUCCUCCU--CUCgC---------------UCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 228417 0.76 0.393757
Target:  5'- gGGCGCUggGGGGcGGGGGCGggaacggggaGGAGCGg -3'
miRNA:   3'- gCUGCGGuuCCUC-CUCUCGC----------UCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 228136 0.72 0.611833
Target:  5'- gGGCGCCGAcGGgcgcgagcucAGGuccacgcggagccGGAGCGGGAGCGg -3'
miRNA:   3'- gCUGCGGUU-CC----------UCC-------------UCUCGCUCUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.