miRNA display CGI


Results 21 - 40 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8990 3' -57.7 NC_002512.2 + 229603 0.66 0.926655
Target:  5'- aGGgGCCcGGGcGGAGAG--GGAGCGg -3'
miRNA:   3'- gCUgCGGuUCCuCCUCUCgcUCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 229513 0.66 0.926143
Target:  5'- gGAgGCCGgcAGGAGGcggcagaGGAGgGAGAGg- -3'
miRNA:   3'- gCUgCGGU--UCCUCC-------UCUCgCUCUCgc -5'
8990 3' -57.7 NC_002512.2 + 127443 0.66 0.924594
Target:  5'- gCGACGCCAugcggguccagcuGGAGGucGGGC-AGaAGCGg -3'
miRNA:   3'- -GCUGCGGUu------------CCUCCu-CUCGcUC-UCGC- -5'
8990 3' -57.7 NC_002512.2 + 97408 0.66 0.921437
Target:  5'- aCGACGCgGAGGccgGGGAGAGaCGcGcGCu -3'
miRNA:   3'- -GCUGCGgUUCC---UCCUCUC-GCuCuCGc -5'
8990 3' -57.7 NC_002512.2 + 101450 0.66 0.921437
Target:  5'- gCGACGCCGAGaGcGGGGGGGUGGacaccGGCc -3'
miRNA:   3'- -GCUGCGGUUC-C-UCCUCUCGCUc----UCGc -5'
8990 3' -57.7 NC_002512.2 + 212592 0.66 0.921437
Target:  5'- aCGACGCgauguccggagaCGAGGAGGAcGA-CGAGGacGCGg -3'
miRNA:   3'- -GCUGCG------------GUUCCUCCU-CUcGCUCU--CGC- -5'
8990 3' -57.7 NC_002512.2 + 39350 0.66 0.921437
Target:  5'- gCGugGCCucAGGAgaguccguGGAGGGUaGAGGGUa -3'
miRNA:   3'- -GCugCGGu-UCCU--------CCUCUCG-CUCUCGc -5'
8990 3' -57.7 NC_002512.2 + 41575 0.66 0.920368
Target:  5'- uCGGCGUCAucaucuucccugGGGAGGugcucaucacacguuAGuauauaaaagcuccaGGCGAGAGCGa -3'
miRNA:   3'- -GCUGCGGU------------UCCUCC---------------UC---------------UCGCUCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 91988 0.66 0.916001
Target:  5'- gGAC-CaCGuGGAGGAGAuCGAGAGCc -3'
miRNA:   3'- gCUGcG-GUuCCUCCUCUcGCUCUCGc -5'
8990 3' -57.7 NC_002512.2 + 108366 0.66 0.916001
Target:  5'- gGGCggGUgGGGGAucgGGAGGGCGgGGGGCGa -3'
miRNA:   3'- gCUG--CGgUUCCU---CCUCUCGC-UCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 78708 0.66 0.916001
Target:  5'- aGGCuCCGAGaGGGaGAGAGCGGGcggGGCu -3'
miRNA:   3'- gCUGcGGUUC-CUC-CUCUCGCUC---UCGc -5'
8990 3' -57.7 NC_002512.2 + 148496 0.66 0.916001
Target:  5'- aGAagGCCGGGGAcGGGGA-CGAGgaGGCGg -3'
miRNA:   3'- gCUg-CGGUUCCU-CCUCUcGCUC--UCGC- -5'
8990 3' -57.7 NC_002512.2 + 123265 0.66 0.916001
Target:  5'- cCGGCGCCGcaugucGGAGGAcaugGAGCGccGGCu -3'
miRNA:   3'- -GCUGCGGUu-----CCUCCU----CUCGCucUCGc -5'
8990 3' -57.7 NC_002512.2 + 49170 0.66 0.916001
Target:  5'- uGACGCUGAGGGaccuGuGCGAcGAGCGg -3'
miRNA:   3'- gCUGCGGUUCCUccu-CuCGCU-CUCGC- -5'
8990 3' -57.7 NC_002512.2 + 133392 0.66 0.915446
Target:  5'- gCGGuCGCCc-GGAccauGGAGGGCGAGAcggccgcGCGg -3'
miRNA:   3'- -GCU-GCGGuuCCU----CCUCUCGCUCU-------CGC- -5'
8990 3' -57.7 NC_002512.2 + 130433 0.66 0.912634
Target:  5'- aGAcCGCCAuccAGGccuuccAGGucgugucguccgacaGGAGCGGGGGCGg -3'
miRNA:   3'- gCU-GCGGU---UCC------UCC---------------UCUCGCUCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 75542 0.66 0.910347
Target:  5'- uCGACGCCGuGGcGGAGGaCGAcGAcGCGg -3'
miRNA:   3'- -GCUGCGGUuCCuCCUCUcGCU-CU-CGC- -5'
8990 3' -57.7 NC_002512.2 + 189895 0.66 0.910347
Target:  5'- gCGGCGgCGAGGAcGGc-GGCGAGgacGGCGg -3'
miRNA:   3'- -GCUGCgGUUCCU-CCucUCGCUC---UCGC- -5'
8990 3' -57.7 NC_002512.2 + 227629 0.66 0.90685
Target:  5'- gCGGCGgCGAGGucAGGcgacGGAGCGcccggguccggaggaAGAGCGg -3'
miRNA:   3'- -GCUGCgGUUCC--UCC----UCUCGC---------------UCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 47719 0.66 0.90685
Target:  5'- -cGCGCCGccucgcGGGAGGAGGGCucggaacagaucguGGAGCu -3'
miRNA:   3'- gcUGCGGU------UCCUCCUCUCGc-------------UCUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.