miRNA display CGI


Results 41 - 60 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8990 3' -57.7 NC_002512.2 + 52629 0.66 0.904475
Target:  5'- gGACuCCcugcGGGAGGAGcuggaGGCGAcgGAGCGg -3'
miRNA:   3'- gCUGcGGu---UCCUCCUC-----UCGCU--CUCGC- -5'
8990 3' -57.7 NC_002512.2 + 100045 0.66 0.904475
Target:  5'- --cCGCCGGGcGcuGAGAcGCGGGGGCGg -3'
miRNA:   3'- gcuGCGGUUC-CucCUCU-CGCUCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 110863 0.66 0.904475
Target:  5'- aCGACgGCCGgcccguccaccAGGAGGAG-GCGcuuGGCGg -3'
miRNA:   3'- -GCUG-CGGU-----------UCCUCCUCuCGCuc-UCGC- -5'
8990 3' -57.7 NC_002512.2 + 130980 0.66 0.904475
Target:  5'- aGACcuCgGAGGAGGAGAuCGGgcGAGCGg -3'
miRNA:   3'- gCUGc-GgUUCCUCCUCUcGCU--CUCGC- -5'
8990 3' -57.7 NC_002512.2 + 217591 0.66 0.904475
Target:  5'- gCGGCGCCGccucGGGGGucgucGGCGAcucGGGCGg -3'
miRNA:   3'- -GCUGCGGUu---CCUCCuc---UCGCU---CUCGC- -5'
8990 3' -57.7 NC_002512.2 + 7728 0.66 0.903876
Target:  5'- aGGCGUCGGgauagcgguccucGGGGGcGGAGCcGGGGCGg -3'
miRNA:   3'- gCUGCGGUU-------------CCUCC-UCUCGcUCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 155367 0.66 0.903876
Target:  5'- gCGGCGCuCGAGGucGGGGcGGCGGcgccggcGGGCGa -3'
miRNA:   3'- -GCUGCG-GUUCCu-CCUC-UCGCU-------CUCGC- -5'
8990 3' -57.7 NC_002512.2 + 127892 0.67 0.898389
Target:  5'- cCGAC-CCucgAAGGucgcgaccguGGGAG-GCGAGGGCGg -3'
miRNA:   3'- -GCUGcGG---UUCC----------UCCUCuCGCUCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 209175 0.67 0.898389
Target:  5'- aCGGCGCgCAAGauccucguggacGAGGAGAcCGAGcGGCGc -3'
miRNA:   3'- -GCUGCG-GUUC------------CUCCUCUcGCUC-UCGC- -5'
8990 3' -57.7 NC_002512.2 + 224351 0.67 0.898389
Target:  5'- -cGCGCCGGGGucGcGGGCGGGAGa- -3'
miRNA:   3'- gcUGCGGUUCCucCuCUCGCUCUCgc -5'
8990 3' -57.7 NC_002512.2 + 171979 0.67 0.898389
Target:  5'- aCGuccCGCCuuAGGAGGuGGGCGGGugaaAGCu -3'
miRNA:   3'- -GCu--GCGGu-UCCUCCuCUCGCUC----UCGc -5'
8990 3' -57.7 NC_002512.2 + 123174 0.67 0.89209
Target:  5'- cCGAgGCCGAGGccGAG-GCGGGA-CGg -3'
miRNA:   3'- -GCUgCGGUUCCucCUCuCGCUCUcGC- -5'
8990 3' -57.7 NC_002512.2 + 149730 0.67 0.89209
Target:  5'- aCGGCGacagCGAGGAGGAcGA-CGAGGGgGa -3'
miRNA:   3'- -GCUGCg---GUUCCUCCU-CUcGCUCUCgC- -5'
8990 3' -57.7 NC_002512.2 + 149555 0.67 0.89209
Target:  5'- aGAgGgCGAGGAGGAcacgGAGgGAGAGg- -3'
miRNA:   3'- gCUgCgGUUCCUCCU----CUCgCUCUCgc -5'
8990 3' -57.7 NC_002512.2 + 78551 0.67 0.89209
Target:  5'- uGGCGCCGGccGGGcc-GCGAGGGCGg -3'
miRNA:   3'- gCUGCGGUUccUCCucuCGCUCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 23562 0.67 0.89209
Target:  5'- cCGACguGCCAccuGGcguGGccgcuGGGCGAGAGCGa -3'
miRNA:   3'- -GCUG--CGGUu--CCu--CCu----CUCGCUCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 119404 0.67 0.891449
Target:  5'- uGACGCCGAcGGAGGAGcugaacaAGCuGAcGGCc -3'
miRNA:   3'- gCUGCGGUU-CCUCCUC-------UCG-CUcUCGc -5'
8990 3' -57.7 NC_002512.2 + 62188 0.67 0.89016
Target:  5'- aGAcCGCCAGGuGAGGuAGguucuucugcuuguAGCGAGAcGCGu -3'
miRNA:   3'- gCU-GCGGUUC-CUCC-UC--------------UCGCUCU-CGC- -5'
8990 3' -57.7 NC_002512.2 + 86679 0.67 0.885583
Target:  5'- aCGGCGCgCGAGGGGGAcGGCaccacccucguGcAGGGCGc -3'
miRNA:   3'- -GCUGCG-GUUCCUCCUcUCG-----------C-UCUCGC- -5'
8990 3' -57.7 NC_002512.2 + 11719 0.67 0.885583
Target:  5'- cCGGCGuaCCGAGGcuacgGGGAcGAGgcCGGGAGCGa -3'
miRNA:   3'- -GCUGC--GGUUCC-----UCCU-CUC--GCUCUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.