miRNA display CGI


Results 61 - 80 of 114 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8990 5' -55.3 NC_002512.2 + 107834 0.68 0.923004
Target:  5'- cGUCACagccgcCGAcgcCGCCCCGGGCGUg -3'
miRNA:   3'- -CAGUGgaa---GCUcauGUGGGGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 46099 0.68 0.921391
Target:  5'- gGUCACCgcgacaaaggcggaGGGU-CGCCCCuGGCGCu -3'
miRNA:   3'- -CAGUGGaag-----------CUCAuGUGGGGcUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 98106 0.68 0.917548
Target:  5'- gGUCGCCUUCc----CGCCCCGcuugccggGGCGCu -3'
miRNA:   3'- -CAGUGGAAGcucauGUGGGGC--------UCGCG- -5'
8990 5' -55.3 NC_002512.2 + 23314 0.68 0.917548
Target:  5'- -gCACCUgCaAGUucugGCGCCCCGGGcCGCc -3'
miRNA:   3'- caGUGGAaGcUCA----UGUGGGGCUC-GCG- -5'
8990 5' -55.3 NC_002512.2 + 103118 0.68 0.911865
Target:  5'- cGUCGCCgcCGccgccGCGCCCCGAGgCGUc -3'
miRNA:   3'- -CAGUGGaaGCuca--UGUGGGGCUC-GCG- -5'
8990 5' -55.3 NC_002512.2 + 189498 0.68 0.911865
Target:  5'- cGUCACCgccaggUgGAG-ACGCUCCGGGCcCg -3'
miRNA:   3'- -CAGUGGa-----AgCUCaUGUGGGGCUCGcG- -5'
8990 5' -55.3 NC_002512.2 + 73127 0.68 0.911865
Target:  5'- -aCGCCcgUCGAGUACACgCCCauGCGg -3'
miRNA:   3'- caGUGGa-AGCUCAUGUG-GGGcuCGCg -5'
8990 5' -55.3 NC_002512.2 + 105627 0.68 0.911865
Target:  5'- -aCGCCgccgUCGGGUGCACCgugucguacuCCGAGUa- -3'
miRNA:   3'- caGUGGa---AGCUCAUGUGG----------GGCUCGcg -5'
8990 5' -55.3 NC_002512.2 + 194412 0.68 0.910117
Target:  5'- cGUCGUCUUCGAGUACGagaacgccaucuucCCCCucuGCGUg -3'
miRNA:   3'- -CAGUGGAAGCUCAUGU--------------GGGGcu-CGCG- -5'
8990 5' -55.3 NC_002512.2 + 41252 0.69 0.905959
Target:  5'- -cCGCCggCGcccuUGCGgCCCGAGCGCu -3'
miRNA:   3'- caGUGGaaGCuc--AUGUgGGGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 198075 0.69 0.905959
Target:  5'- cGUC-CCcUCGAccGCGCCCCG-GCGUc -3'
miRNA:   3'- -CAGuGGaAGCUcaUGUGGGGCuCGCG- -5'
8990 5' -55.3 NC_002512.2 + 140255 0.69 0.89983
Target:  5'- cGUCugCguggcCGAGUcuucgGCG-CCCGAGCGCc -3'
miRNA:   3'- -CAGugGaa---GCUCA-----UGUgGGGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 211895 0.69 0.89983
Target:  5'- gGUCACCUUcCGGGgcUGCCgcgucgUCGAGCGUc -3'
miRNA:   3'- -CAGUGGAA-GCUCauGUGG------GGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 72791 0.69 0.89983
Target:  5'- cGUCGCCgggaCGGGccCGCCgUGGGCGCc -3'
miRNA:   3'- -CAGUGGaa--GCUCauGUGGgGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 128563 0.69 0.893482
Target:  5'- -cCACCUUCGAcgGC-CUCCGGGgGCc -3'
miRNA:   3'- caGUGGAAGCUcaUGuGGGGCUCgCG- -5'
8990 5' -55.3 NC_002512.2 + 99245 0.69 0.893482
Target:  5'- -gCGCagaagUCGAGggACGCCCCGAGgaCGCc -3'
miRNA:   3'- caGUGga---AGCUCa-UGUGGGGCUC--GCG- -5'
8990 5' -55.3 NC_002512.2 + 94310 0.69 0.886917
Target:  5'- -cCACC--CGGuUGCGCCCCG-GCGCg -3'
miRNA:   3'- caGUGGaaGCUcAUGUGGGGCuCGCG- -5'
8990 5' -55.3 NC_002512.2 + 101123 0.69 0.884231
Target:  5'- -gCGCCUcgUCGAGgguguccuugccCACCuuGAGCGCc -3'
miRNA:   3'- caGUGGA--AGCUCau----------GUGGggCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 72844 0.69 0.880139
Target:  5'- -cCGCCUUgcCGGGUccuCGCUCCGGGcCGCg -3'
miRNA:   3'- caGUGGAA--GCUCAu--GUGGGGCUC-GCG- -5'
8990 5' -55.3 NC_002512.2 + 121521 0.7 0.865961
Target:  5'- cGUCAUCcUCGGGga-GCUCCG-GCGCg -3'
miRNA:   3'- -CAGUGGaAGCUCaugUGGGGCuCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.