miRNA display CGI


Results 41 - 60 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8990 5' -55.3 NC_002512.2 + 176057 0.67 0.948572
Target:  5'- -cCGCCccCGGGUcucucuuguacgccgACACCUCGgAGCGCa -3'
miRNA:   3'- caGUGGaaGCUCA---------------UGUGGGGC-UCGCG- -5'
8990 5' -55.3 NC_002512.2 + 117585 0.67 0.948572
Target:  5'- cGUCACCggcaUCGAGcagcucugcguggauUACGCCCUGcaccGCGUc -3'
miRNA:   3'- -CAGUGGa---AGCUC---------------AUGUGGGGCu---CGCG- -5'
8990 5' -55.3 NC_002512.2 + 218199 0.67 0.946902
Target:  5'- cUCGCCccUCGGGccccCGCCUCGGGcCGCg -3'
miRNA:   3'- cAGUGGa-AGCUCau--GUGGGGCUC-GCG- -5'
8990 5' -55.3 NC_002512.2 + 108569 0.67 0.946902
Target:  5'- gGUCACCgugccgaucuuuUUCGGGgg-GCCCCGGGgaGCg -3'
miRNA:   3'- -CAGUGG------------AAGCUCaugUGGGGCUCg-CG- -5'
8990 5' -55.3 NC_002512.2 + 64236 0.67 0.946902
Target:  5'- --gGCCUgCGGGaagGC-CCCCGaAGCGCu -3'
miRNA:   3'- cagUGGAaGCUCa--UGuGGGGC-UCGCG- -5'
8990 5' -55.3 NC_002512.2 + 50456 0.67 0.944331
Target:  5'- uGUCAgggcuUCUUUGGGUcGCauagggaaaauucauGCCCCGGGUGCg -3'
miRNA:   3'- -CAGU-----GGAAGCUCA-UG---------------UGGGGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 117386 0.67 0.944331
Target:  5'- cGUC-CCUggacgugcacggcaUCGAGgaccagggcgucaucCGCUCCGAGCGCg -3'
miRNA:   3'- -CAGuGGA--------------AGCUCau-------------GUGGGGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 66376 0.67 0.942572
Target:  5'- cGUCAUgaUCGuGUGCGCaauCgCGGGCGCu -3'
miRNA:   3'- -CAGUGgaAGCuCAUGUGg--G-GCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 149055 0.67 0.942572
Target:  5'- cUCGCCUaCGGGgccCGCUCCGccgacgccgaGGCGCg -3'
miRNA:   3'- cAGUGGAaGCUCau-GUGGGGC----------UCGCG- -5'
8990 5' -55.3 NC_002512.2 + 125081 0.67 0.938018
Target:  5'- -aCGCCcUgGAGUACAaCCCGccGCGCg -3'
miRNA:   3'- caGUGGaAgCUCAUGUgGGGCu-CGCG- -5'
8990 5' -55.3 NC_002512.2 + 87805 0.67 0.938018
Target:  5'- -cCGCgUUCGGuUGCACCCCcAGCGa -3'
miRNA:   3'- caGUGgAAGCUcAUGUGGGGcUCGCg -5'
8990 5' -55.3 NC_002512.2 + 126121 0.67 0.938018
Target:  5'- uGUCGCCgguUCGAGaucuCCUCGuAGCGCc -3'
miRNA:   3'- -CAGUGGa--AGCUCauguGGGGC-UCGCG- -5'
8990 5' -55.3 NC_002512.2 + 223197 0.67 0.938018
Target:  5'- -cCGCCcgaCGGGgacgGCGuCCCgGAGCGCg -3'
miRNA:   3'- caGUGGaa-GCUCa---UGU-GGGgCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 101871 0.67 0.938018
Target:  5'- -aCGCCggggCGGGUcuguucuGCCUCGGGCGCg -3'
miRNA:   3'- caGUGGaa--GCUCAug-----UGGGGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 116536 0.67 0.938018
Target:  5'- gGUCGCCUUCGcGgACGCCgaugUCGucuGGCGCa -3'
miRNA:   3'- -CAGUGGAAGCuCaUGUGG----GGC---UCGCG- -5'
8990 5' -55.3 NC_002512.2 + 10436 0.68 0.933728
Target:  5'- cGUCGCCgUCGGGcacgggggcgcggagGaggccgccgcCGCCCCGGGCGUg -3'
miRNA:   3'- -CAGUGGaAGCUCa--------------U----------GUGGGGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 29567 0.68 0.93324
Target:  5'- -aCGCCggCGGGaagccGCuCCCCGAGgGCg -3'
miRNA:   3'- caGUGGaaGCUCa----UGuGGGGCUCgCG- -5'
8990 5' -55.3 NC_002512.2 + 11775 0.68 0.93324
Target:  5'- -cUACC--CGAGcg-ACCCCGGGCGCg -3'
miRNA:   3'- caGUGGaaGCUCaugUGGGGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 77553 0.68 0.928235
Target:  5'- cGUCGCggacggCGGGU-CGCCCaCGGGCGUc -3'
miRNA:   3'- -CAGUGgaa---GCUCAuGUGGG-GCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 130838 0.68 0.925124
Target:  5'- -cCGCggUCGAGUACcggcggucgggcgagGCCCCcaccGGGCGCg -3'
miRNA:   3'- caGUGgaAGCUCAUG---------------UGGGG----CUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.