miRNA display CGI


Results 21 - 40 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8990 5' -55.3 NC_002512.2 + 102612 0.66 0.968359
Target:  5'- cUCGCCguccgUgGAGUcgcacaGCACCCgGAGCa- -3'
miRNA:   3'- cAGUGGa----AgCUCA------UGUGGGgCUCGcg -5'
8990 5' -55.3 NC_002512.2 + 12389 0.66 0.966549
Target:  5'- cUCGCCUUCGGGcggcggcggcgGCGCCgggaucgcgagcucgCCGcGCGCg -3'
miRNA:   3'- cAGUGGAAGCUCa----------UGUGG---------------GGCuCGCG- -5'
8990 5' -55.3 NC_002512.2 + 218853 0.66 0.965303
Target:  5'- uUCGCCgaCGAGgucgcccgggGCACCgacgCCGuGCGCg -3'
miRNA:   3'- cAGUGGaaGCUCa---------UGUGG----GGCuCGCG- -5'
8990 5' -55.3 NC_002512.2 + 187297 0.66 0.964986
Target:  5'- ----nCUUCGGGUcCGCCCCGccgcucgccucgcGGCGCc -3'
miRNA:   3'- cagugGAAGCUCAuGUGGGGC-------------UCGCG- -5'
8990 5' -55.3 NC_002512.2 + 118454 0.66 0.963372
Target:  5'- gGUCACCuacUgcgcgcagaucuacaUCGAGUACGgCgCCGAGCuGCc -3'
miRNA:   3'- -CAGUGG---A---------------AGCUCAUGUgG-GGCUCG-CG- -5'
8990 5' -55.3 NC_002512.2 + 111861 0.66 0.962379
Target:  5'- cGUCGCCgcguccucgucguaCGGGUcCACCCCGuGCa- -3'
miRNA:   3'- -CAGUGGaa------------GCUCAuGUGGGGCuCGcg -5'
8990 5' -55.3 NC_002512.2 + 117707 0.66 0.962044
Target:  5'- -gCACCUgcggCGGGUGCGCagcgacaUGGGUGCg -3'
miRNA:   3'- caGUGGAa---GCUCAUGUGgg-----GCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 160129 0.66 0.962044
Target:  5'- --gACCUgggCGAGgugGCGaUCCGGGCGCc -3'
miRNA:   3'- cagUGGAa--GCUCa--UGUgGGGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 44352 0.66 0.962044
Target:  5'- uUCGCCcugUG-GUGCGCCCUGuGUGUg -3'
miRNA:   3'- cAGUGGaa-GCuCAUGUGGGGCuCGCG- -5'
8990 5' -55.3 NC_002512.2 + 27618 0.66 0.962044
Target:  5'- -cCACagcgcggaGAG-ACGCUCCGGGCGCg -3'
miRNA:   3'- caGUGgaag----CUCaUGUGGGGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 106323 0.67 0.958579
Target:  5'- -gCGCCUUCGGcgGCucuCCCCGGuCGCu -3'
miRNA:   3'- caGUGGAAGCUcaUGu--GGGGCUcGCG- -5'
8990 5' -55.3 NC_002512.2 + 189253 0.67 0.958579
Target:  5'- cGUCACCgUCGgggagaGGUACgucgagguccgGCCUCGcGGCGCg -3'
miRNA:   3'- -CAGUGGaAGC------UCAUG-----------UGGGGC-UCGCG- -5'
8990 5' -55.3 NC_002512.2 + 126384 0.67 0.958579
Target:  5'- -cCGCCcgggaGAGcGCccgggGCCCCGGGCGCc -3'
miRNA:   3'- caGUGGaag--CUCaUG-----UGGGGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 105907 0.67 0.958221
Target:  5'- cUCGCCgUCGucGUACacggaacgccagaGCCCCGAGgGUc -3'
miRNA:   3'- cAGUGGaAGCu-CAUG-------------UGGGGCUCgCG- -5'
8990 5' -55.3 NC_002512.2 + 106918 0.67 0.954903
Target:  5'- -gCGCCcUCGc--GCACCCgcaCGAGCGCg -3'
miRNA:   3'- caGUGGaAGCucaUGUGGG---GCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 83792 0.67 0.954903
Target:  5'- -cCGCCgcCGAGgacCGCgUCGGGCGCg -3'
miRNA:   3'- caGUGGaaGCUCau-GUGgGGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 124166 0.67 0.951012
Target:  5'- --aACCagaggUGGGaGCggACCCCGAGCGCg -3'
miRNA:   3'- cagUGGaa---GCUCaUG--UGGGGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 103495 0.67 0.951012
Target:  5'- -gCGCC--CGGG---GCCCCGGGCGCu -3'
miRNA:   3'- caGUGGaaGCUCaugUGGGGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 88590 0.67 0.951012
Target:  5'- cGUCGCCgcCG-GUGC-CgCCGuGCGCg -3'
miRNA:   3'- -CAGUGGaaGCuCAUGuGgGGCuCGCG- -5'
8990 5' -55.3 NC_002512.2 + 111324 0.67 0.950207
Target:  5'- --gACCUUgGAGaugccguuguugGCGUCCCGGGCGCg -3'
miRNA:   3'- cagUGGAAgCUCa-----------UGUGGGGCUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.