miRNA display CGI


Results 21 - 40 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8990 5' -55.3 NC_002512.2 + 118454 0.66 0.963372
Target:  5'- gGUCACCuacUgcgcgcagaucuacaUCGAGUACGgCgCCGAGCuGCc -3'
miRNA:   3'- -CAGUGG---A---------------AGCUCAUGUgG-GGCUCG-CG- -5'
8990 5' -55.3 NC_002512.2 + 90075 0.66 0.968359
Target:  5'- uUCGCCgggggCGGGUGgAUCuCCGuGUGCg -3'
miRNA:   3'- cAGUGGaa---GCUCAUgUGG-GGCuCGCG- -5'
8990 5' -55.3 NC_002512.2 + 126480 0.66 0.968359
Target:  5'- cGUCuuCgaCGAGUucgugGCCCCGgAGCGCg -3'
miRNA:   3'- -CAGugGaaGCUCAug---UGGGGC-UCGCG- -5'
8990 5' -55.3 NC_002512.2 + 12389 0.66 0.966549
Target:  5'- cUCGCCUUCGGGcggcggcggcgGCGCCgggaucgcgagcucgCCGcGCGCg -3'
miRNA:   3'- cAGUGGAAGCUCa----------UGUGG---------------GGCuCGCG- -5'
8990 5' -55.3 NC_002512.2 + 84853 0.66 0.97122
Target:  5'- --gGCCguccCGGGcguUGCGCgCCCGGGCGUa -3'
miRNA:   3'- cagUGGaa--GCUC---AUGUG-GGGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 199386 0.66 0.976375
Target:  5'- cUCACCUUCacgaaccGGUggcGCACCCUGGGguUGCa -3'
miRNA:   3'- cAGUGGAAGc------UCA---UGUGGGGCUC--GCG- -5'
8990 5' -55.3 NC_002512.2 + 71088 0.66 0.976375
Target:  5'- --gGCCgagaagUCGAcgACGCCCCGGGC-Ca -3'
miRNA:   3'- cagUGGa-----AGCUcaUGUGGGGCUCGcG- -5'
8990 5' -55.3 NC_002512.2 + 43131 0.66 0.97389
Target:  5'- --gGCCcgCGGGaACAUgCCGGGCGUg -3'
miRNA:   3'- cagUGGaaGCUCaUGUGgGGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 8850 0.66 0.97389
Target:  5'- cUCGCUgcCGGGcgGCACCCCGuugguGGcCGCg -3'
miRNA:   3'- cAGUGGaaGCUCa-UGUGGGGC-----UC-GCG- -5'
8990 5' -55.3 NC_002512.2 + 84339 0.66 0.97122
Target:  5'- cGUCGCCgcguccUCGAGcgggAUGCUCCGGcccgacGCGCa -3'
miRNA:   3'- -CAGUGGa-----AGCUCa---UGUGGGGCU------CGCG- -5'
8990 5' -55.3 NC_002512.2 + 103495 0.67 0.951012
Target:  5'- -gCGCC--CGGG---GCCCCGGGCGCu -3'
miRNA:   3'- caGUGGaaGCUCaugUGGGGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 117585 0.67 0.948572
Target:  5'- cGUCACCggcaUCGAGcagcucugcguggauUACGCCCUGcaccGCGUc -3'
miRNA:   3'- -CAGUGGa---AGCUC---------------AUGUGGGGCu---CGCG- -5'
8990 5' -55.3 NC_002512.2 + 108569 0.67 0.946902
Target:  5'- gGUCACCgugccgaucuuuUUCGGGgg-GCCCCGGGgaGCg -3'
miRNA:   3'- -CAGUGG------------AAGCUCaugUGGGGCUCg-CG- -5'
8990 5' -55.3 NC_002512.2 + 64236 0.67 0.946902
Target:  5'- --gGCCUgCGGGaagGC-CCCCGaAGCGCu -3'
miRNA:   3'- cagUGGAaGCUCa--UGuGGGGC-UCGCG- -5'
8990 5' -55.3 NC_002512.2 + 117386 0.67 0.944331
Target:  5'- cGUC-CCUggacgugcacggcaUCGAGgaccagggcgucaucCGCUCCGAGCGCg -3'
miRNA:   3'- -CAGuGGA--------------AGCUCau-------------GUGGGGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 126121 0.67 0.938018
Target:  5'- uGUCGCCgguUCGAGaucuCCUCGuAGCGCc -3'
miRNA:   3'- -CAGUGGa--AGCUCauguGGGGC-UCGCG- -5'
8990 5' -55.3 NC_002512.2 + 116536 0.67 0.938018
Target:  5'- gGUCGCCUUCGcGgACGCCgaugUCGucuGGCGCa -3'
miRNA:   3'- -CAGUGGAAGCuCaUGUGG----GGC---UCGCG- -5'
8990 5' -55.3 NC_002512.2 + 101871 0.67 0.938018
Target:  5'- -aCGCCggggCGGGUcuguucuGCCUCGGGCGCg -3'
miRNA:   3'- caGUGGaa--GCUCAug-----UGGGGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 106323 0.67 0.958579
Target:  5'- -gCGCCUUCGGcgGCucuCCCCGGuCGCu -3'
miRNA:   3'- caGUGGAAGCUcaUGu--GGGGCUcGCG- -5'
8990 5' -55.3 NC_002512.2 + 88590 0.67 0.951012
Target:  5'- cGUCGCCgcCG-GUGC-CgCCGuGCGCg -3'
miRNA:   3'- -CAGUGGaaGCuCAUGuGgGGCuCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.