miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8990 5' -55.3 NC_002512.2 + 199386 0.66 0.976375
Target:  5'- cUCACCUUCacgaaccGGUggcGCACCCUGGGguUGCa -3'
miRNA:   3'- cAGUGGAAGc------UCA---UGUGGGGCUC--GCG- -5'
8990 5' -55.3 NC_002512.2 + 30470 0.66 0.976375
Target:  5'- -aCAUgUUCGAggcccuGUGCaACCCCaGGGUGCg -3'
miRNA:   3'- caGUGgAAGCU------CAUG-UGGGG-CUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 108784 0.66 0.976375
Target:  5'- cGUCACCgaacucuaCGGGc-CGCUgCGGGCGCu -3'
miRNA:   3'- -CAGUGGaa------GCUCauGUGGgGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 71088 0.66 0.976375
Target:  5'- --gGCCgagaagUCGAcgACGCCCCGGGC-Ca -3'
miRNA:   3'- cagUGGa-----AGCUcaUGUGGGGCUCGcG- -5'
8990 5' -55.3 NC_002512.2 + 111424 0.66 0.976375
Target:  5'- aGUCuCCgcgacCGAGUAguUCCCGuAGUGCg -3'
miRNA:   3'- -CAGuGGaa---GCUCAUguGGGGC-UCGCG- -5'
8990 5' -55.3 NC_002512.2 + 43131 0.66 0.97389
Target:  5'- --gGCCcgCGGGaACAUgCCGGGCGUg -3'
miRNA:   3'- cagUGGaaGCUCaUGUGgGGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 3195 0.66 0.976375
Target:  5'- -aCGCCgccgCGGGcgACGgCCCG-GCGCu -3'
miRNA:   3'- caGUGGaa--GCUCa-UGUgGGGCuCGCG- -5'
8990 5' -55.3 NC_002512.2 + 185527 0.66 0.97389
Target:  5'- -cCGCuCUUCGAGggggugGCcuaccgGCCCCGcGGCGUg -3'
miRNA:   3'- caGUG-GAAGCUCa-----UG------UGGGGC-UCGCG- -5'
8990 5' -55.3 NC_002512.2 + 133225 0.66 0.974146
Target:  5'- -cCGCCcagCGAGgacgggagggcggcgGCGCCCCGGuCGCg -3'
miRNA:   3'- caGUGGaa-GCUCa--------------UGUGGGGCUcGCG- -5'
8990 5' -55.3 NC_002512.2 + 84339 0.66 0.97122
Target:  5'- cGUCGCCgcguccUCGAGcgggAUGCUCCGGcccgacGCGCa -3'
miRNA:   3'- -CAGUGGa-----AGCUCa---UGUGGGGCU------CGCG- -5'
8990 5' -55.3 NC_002512.2 + 111861 0.66 0.962379
Target:  5'- cGUCGCCgcguccucgucguaCGGGUcCACCCCGuGCa- -3'
miRNA:   3'- -CAGUGGaa------------GCUCAuGUGGGGCuCGcg -5'
8990 5' -55.3 NC_002512.2 + 27618 0.66 0.962044
Target:  5'- -cCACagcgcggaGAG-ACGCUCCGGGCGCg -3'
miRNA:   3'- caGUGgaag----CUCaUGUGGGGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 90075 0.66 0.968359
Target:  5'- uUCGCCgggggCGGGUGgAUCuCCGuGUGCg -3'
miRNA:   3'- cAGUGGaa---GCUCAUgUGG-GGCuCGCG- -5'
8990 5' -55.3 NC_002512.2 + 12389 0.66 0.966549
Target:  5'- cUCGCCUUCGGGcggcggcggcgGCGCCgggaucgcgagcucgCCGcGCGCg -3'
miRNA:   3'- cAGUGGAAGCUCa----------UGUGG---------------GGCuCGCG- -5'
8990 5' -55.3 NC_002512.2 + 118454 0.66 0.963372
Target:  5'- gGUCACCuacUgcgcgcagaucuacaUCGAGUACGgCgCCGAGCuGCc -3'
miRNA:   3'- -CAGUGG---A---------------AGCUCAUGUgG-GGCUCG-CG- -5'
8990 5' -55.3 NC_002512.2 + 137090 0.66 0.97122
Target:  5'- --gGCCcgCGGuGUGCGCCCa-GGCGCg -3'
miRNA:   3'- cagUGGaaGCU-CAUGUGGGgcUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 84853 0.66 0.97122
Target:  5'- --gGCCguccCGGGcguUGCGCgCCCGGGCGUa -3'
miRNA:   3'- cagUGGaa--GCUC---AUGUG-GGGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 8850 0.66 0.97389
Target:  5'- cUCGCUgcCGGGcgGCACCCCGuugguGGcCGCg -3'
miRNA:   3'- cAGUGGaaGCUCa-UGUGGGGC-----UC-GCG- -5'
8990 5' -55.3 NC_002512.2 + 126480 0.66 0.968359
Target:  5'- cGUCuuCgaCGAGUucgugGCCCCGgAGCGCg -3'
miRNA:   3'- -CAGugGaaGCUCAug---UGGGGC-UCGCG- -5'
8990 5' -55.3 NC_002512.2 + 211278 0.66 0.97389
Target:  5'- -cCGCUUuugCGAGUGCGCC--GAGUGCg -3'
miRNA:   3'- caGUGGAa--GCUCAUGUGGggCUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.