miRNA display CGI


Results 1 - 20 of 114 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8990 5' -55.3 NC_002512.2 + 3195 0.66 0.976375
Target:  5'- -aCGCCgccgCGGGcgACGgCCCG-GCGCu -3'
miRNA:   3'- caGUGGaa--GCUCa-UGUgGGGCuCGCG- -5'
8990 5' -55.3 NC_002512.2 + 8202 0.7 0.865231
Target:  5'- cGUCGCCgggCGGGUguccGCgucccagacguagGCCUCGAGCGUc -3'
miRNA:   3'- -CAGUGGaa-GCUCA----UG-------------UGGGGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 8850 0.66 0.97389
Target:  5'- cUCGCUgcCGGGcgGCACCCCGuugguGGcCGCg -3'
miRNA:   3'- cAGUGGaaGCUCa-UGUGGGGC-----UC-GCG- -5'
8990 5' -55.3 NC_002512.2 + 10176 0.71 0.784122
Target:  5'- -cCGCCUcUC----GCGCCCCGAGCGCc -3'
miRNA:   3'- caGUGGA-AGcucaUGUGGGGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 10436 0.68 0.933728
Target:  5'- cGUCGCCgUCGGGcacgggggcgcggagGaggccgccgcCGCCCCGGGCGUg -3'
miRNA:   3'- -CAGUGGaAGCUCa--------------U----------GUGGGGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 11775 0.68 0.93324
Target:  5'- -cUACC--CGAGcg-ACCCCGGGCGCg -3'
miRNA:   3'- caGUGGaaGCUCaugUGGGGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 12389 0.66 0.966549
Target:  5'- cUCGCCUUCGGGcggcggcggcgGCGCCgggaucgcgagcucgCCGcGCGCg -3'
miRNA:   3'- cAGUGGAAGCUCa----------UGUGG---------------GGCuCGCG- -5'
8990 5' -55.3 NC_002512.2 + 16875 0.7 0.85857
Target:  5'- -gCACC-UCGAGaGgGCCCCGGGCcCg -3'
miRNA:   3'- caGUGGaAGCUCaUgUGGGGCUCGcG- -5'
8990 5' -55.3 NC_002512.2 + 23314 0.68 0.917548
Target:  5'- -gCACCUgCaAGUucugGCGCCCCGGGcCGCc -3'
miRNA:   3'- caGUGGAaGcUCA----UGUGGGGCUC-GCG- -5'
8990 5' -55.3 NC_002512.2 + 27618 0.66 0.962044
Target:  5'- -cCACagcgcggaGAG-ACGCUCCGGGCGCg -3'
miRNA:   3'- caGUGgaag----CUCaUGUGGGGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 29567 0.68 0.93324
Target:  5'- -aCGCCggCGGGaagccGCuCCCCGAGgGCg -3'
miRNA:   3'- caGUGGaaGCUCa----UGuGGGGCUCgCG- -5'
8990 5' -55.3 NC_002512.2 + 30470 0.66 0.976375
Target:  5'- -aCAUgUUCGAggcccuGUGCaACCCCaGGGUGCg -3'
miRNA:   3'- caGUGgAAGCU------CAUG-UGGGG-CUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 33630 0.7 0.843214
Target:  5'- cUCGCCgaggCGAGagGCGCgCgCGGGCGCg -3'
miRNA:   3'- cAGUGGaa--GCUCa-UGUGgG-GCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 37383 0.7 0.85857
Target:  5'- aUguCCUcCGAGaAgACCUCGAGCGCg -3'
miRNA:   3'- cAguGGAaGCUCaUgUGGGGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 40820 0.71 0.80177
Target:  5'- cUCGCCgUCGAGaGCGCCgCCGGcCGCu -3'
miRNA:   3'- cAGUGGaAGCUCaUGUGG-GGCUcGCG- -5'
8990 5' -55.3 NC_002512.2 + 41252 0.69 0.905959
Target:  5'- -cCGCCggCGcccuUGCGgCCCGAGCGCu -3'
miRNA:   3'- caGUGGaaGCuc--AUGUgGGGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 43131 0.66 0.97389
Target:  5'- --gGCCcgCGGGaACAUgCCGGGCGUg -3'
miRNA:   3'- cagUGGaaGCUCaUGUGgGGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 44352 0.66 0.962044
Target:  5'- uUCGCCcugUG-GUGCGCCCUGuGUGUg -3'
miRNA:   3'- cAGUGGaa-GCuCAUGUGGGGCuCGCG- -5'
8990 5' -55.3 NC_002512.2 + 45859 0.7 0.835261
Target:  5'- uUCACUUgCGAGUucggAC-CCCCGGGCGa -3'
miRNA:   3'- cAGUGGAaGCUCA----UGuGGGGCUCGCg -5'
8990 5' -55.3 NC_002512.2 + 46099 0.68 0.921391
Target:  5'- gGUCACCgcgacaaaggcggaGGGU-CGCCCCuGGCGCu -3'
miRNA:   3'- -CAGUGGaag-----------CUCAuGUGGGGcUCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.