miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8990 5' -55.3 NC_002512.2 + 223197 0.67 0.938018
Target:  5'- -cCGCCcgaCGGGgacgGCGuCCCgGAGCGCg -3'
miRNA:   3'- caGUGGaa-GCUCa---UGU-GGGgCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 222247 0.73 0.717757
Target:  5'- cGUCGCCguggCGGGUcucgugauggccuGCGCCCugcuCGGGCGCu -3'
miRNA:   3'- -CAGUGGaa--GCUCA-------------UGUGGG----GCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 221711 0.75 0.590221
Target:  5'- --gGCC-UCGGGUGCuacgccgagauCCCCGAGCGCc -3'
miRNA:   3'- cagUGGaAGCUCAUGu----------GGGGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 218853 0.66 0.965303
Target:  5'- uUCGCCgaCGAGgucgcccgggGCACCgacgCCGuGCGCg -3'
miRNA:   3'- cAGUGGaaGCUCa---------UGUGG----GGCuCGCG- -5'
8990 5' -55.3 NC_002512.2 + 218199 0.67 0.946902
Target:  5'- cUCGCCccUCGGGccccCGCCUCGGGcCGCg -3'
miRNA:   3'- cAGUGGa-AGCUCau--GUGGGGCUC-GCG- -5'
8990 5' -55.3 NC_002512.2 + 211895 0.69 0.89983
Target:  5'- gGUCACCUUcCGGGgcUGCCgcgucgUCGAGCGUc -3'
miRNA:   3'- -CAGUGGAA-GCUCauGUGG------GGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 211278 0.66 0.97389
Target:  5'- -cCGCUUuugCGAGUGCGCC--GAGUGCg -3'
miRNA:   3'- caGUGGAa--GCUCAUGUGGggCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 211155 0.75 0.570495
Target:  5'- cGUCAUCcagGGcGUGCugCCCGAGCGCg -3'
miRNA:   3'- -CAGUGGaagCU-CAUGugGGGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 210097 0.73 0.709031
Target:  5'- --gACCUucaagugcgacgUCGAGUACGCCCUGcccuGCGCc -3'
miRNA:   3'- cagUGGA------------AGCUCAUGUGGGGCu---CGCG- -5'
8990 5' -55.3 NC_002512.2 + 199386 0.66 0.976375
Target:  5'- cUCACCUUCacgaaccGGUggcGCACCCUGGGguUGCa -3'
miRNA:   3'- cAGUGGAAGc------UCA---UGUGGGGCUC--GCG- -5'
8990 5' -55.3 NC_002512.2 + 198075 0.69 0.905959
Target:  5'- cGUC-CCcUCGAccGCGCCCCG-GCGUc -3'
miRNA:   3'- -CAGuGGaAGCUcaUGUGGGGCuCGCG- -5'
8990 5' -55.3 NC_002512.2 + 197121 0.76 0.560691
Target:  5'- -gCGCCUUCGAGaucaucgGCGCCCUGGGCu- -3'
miRNA:   3'- caGUGGAAGCUCa------UGUGGGGCUCGcg -5'
8990 5' -55.3 NC_002512.2 + 194412 0.68 0.910117
Target:  5'- cGUCGUCUUCGAGUACGagaacgccaucuucCCCCucuGCGUg -3'
miRNA:   3'- -CAGUGGAAGCUCAUGU--------------GGGGcu-CGCG- -5'
8990 5' -55.3 NC_002512.2 + 191890 0.73 0.728344
Target:  5'- uGUUACCUgggUGGGauuuccGCGCCUCGAGCGUg -3'
miRNA:   3'- -CAGUGGAa--GCUCa-----UGUGGGGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 190990 0.66 0.97122
Target:  5'- cGUCGCCgagaagacCGcGUACugCCCGcGCGg -3'
miRNA:   3'- -CAGUGGaa------GCuCAUGugGGGCuCGCg -5'
8990 5' -55.3 NC_002512.2 + 189498 0.68 0.911865
Target:  5'- cGUCACCgccaggUgGAG-ACGCUCCGGGCcCg -3'
miRNA:   3'- -CAGUGGa-----AgCUCaUGUGGGGCUCGcG- -5'
8990 5' -55.3 NC_002512.2 + 189253 0.67 0.958579
Target:  5'- cGUCACCgUCGgggagaGGUACgucgagguccgGCCUCGcGGCGCg -3'
miRNA:   3'- -CAGUGGaAGC------UCAUG-----------UGGGGC-UCGCG- -5'
8990 5' -55.3 NC_002512.2 + 188862 1.12 0.00356
Target:  5'- gGUCACCUUCGAGUACACCCCGAGCGCg -3'
miRNA:   3'- -CAGUGGAAGCUCAUGUGGGGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 187297 0.66 0.964986
Target:  5'- ----nCUUCGGGUcCGCCCCGccgcucgccucgcGGCGCc -3'
miRNA:   3'- cagugGAAGCUCAuGUGGGGC-------------UCGCG- -5'
8990 5' -55.3 NC_002512.2 + 187275 0.75 0.580341
Target:  5'- cGUCGCCU-CGaAGUGC-CCCCGGGCu- -3'
miRNA:   3'- -CAGUGGAaGC-UCAUGuGGGGCUCGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.