miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8990 5' -55.3 NC_002512.2 + 188862 1.12 0.00356
Target:  5'- gGUCACCUUCGAGUACACCCCGAGCGCg -3'
miRNA:   3'- -CAGUGGAAGCUCAUGUGGGGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 128279 0.79 0.41425
Target:  5'- cGUCACCcagauccucucgugCGGGUGCACgCCCGAGuCGCg -3'
miRNA:   3'- -CAGUGGaa------------GCUCAUGUG-GGGCUC-GCG- -5'
8990 5' -55.3 NC_002512.2 + 122767 0.77 0.503038
Target:  5'- cGUCACCUaUCGGGUcguCucCCCCGAGgGCg -3'
miRNA:   3'- -CAGUGGA-AGCUCAu--Gu-GGGGCUCgCG- -5'
8990 5' -55.3 NC_002512.2 + 197121 0.76 0.560691
Target:  5'- -gCGCCUUCGAGaucaucgGCGCCCUGGGCu- -3'
miRNA:   3'- caGUGGAAGCUCa------UGUGGGGCUCGcg -5'
8990 5' -55.3 NC_002512.2 + 211155 0.75 0.570495
Target:  5'- cGUCAUCcagGGcGUGCugCCCGAGCGCg -3'
miRNA:   3'- -CAGUGGaagCU-CAUGugGGGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 87971 0.75 0.580341
Target:  5'- cUCACCccgUCGGGgccgcgGCGCCCCGA-CGCg -3'
miRNA:   3'- cAGUGGa--AGCUCa-----UGUGGGGCUcGCG- -5'
8990 5' -55.3 NC_002512.2 + 187275 0.75 0.580341
Target:  5'- cGUCGCCU-CGaAGUGC-CCCCGGGCu- -3'
miRNA:   3'- -CAGUGGAaGC-UCAUGuGGGGCUCGcg -5'
8990 5' -55.3 NC_002512.2 + 221711 0.75 0.590221
Target:  5'- --gGCC-UCGGGUGCuacgccgagauCCCCGAGCGCc -3'
miRNA:   3'- cagUGGaAGCUCAUGu----------GGGGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 109525 0.75 0.610062
Target:  5'- cGUCACC-UCGugcacGUACACCCCcuucuGGGUGCa -3'
miRNA:   3'- -CAGUGGaAGCu----CAUGUGGGG-----CUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 116738 0.74 0.629966
Target:  5'- --gGCCgcggCGAGgccgGCGCCCCGcGCGCg -3'
miRNA:   3'- cagUGGaa--GCUCa---UGUGGGGCuCGCG- -5'
8990 5' -55.3 NC_002512.2 + 171515 0.74 0.639923
Target:  5'- cGUCACCcUCGAGg--ACgUCGAGCGCa -3'
miRNA:   3'- -CAGUGGaAGCUCaugUGgGGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 111890 0.74 0.659814
Target:  5'- --gGCC-UCGAGgcaauccaGCACCCCGAGCaGCa -3'
miRNA:   3'- cagUGGaAGCUCa-------UGUGGGGCUCG-CG- -5'
8990 5' -55.3 NC_002512.2 + 137138 0.74 0.669731
Target:  5'- cGUCGCCcgUCGucgGCGCCaucggaCCGAGCGCg -3'
miRNA:   3'- -CAGUGGa-AGCucaUGUGG------GGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 110502 0.73 0.709031
Target:  5'- cGUCAUgUUCGGGUugcggccgcGCGCCgCGAGCGa -3'
miRNA:   3'- -CAGUGgAAGCUCA---------UGUGGgGCUCGCg -5'
8990 5' -55.3 NC_002512.2 + 97873 0.73 0.709031
Target:  5'- cGUCGCCgcCGAGguccccccgGCGCCCgGGGCGg -3'
miRNA:   3'- -CAGUGGaaGCUCa--------UGUGGGgCUCGCg -5'
8990 5' -55.3 NC_002512.2 + 210097 0.73 0.709031
Target:  5'- --gACCUucaagugcgacgUCGAGUACGCCCUGcccuGCGCc -3'
miRNA:   3'- cagUGGA------------AGCUCAUGUGGGGCu---CGCG- -5'
8990 5' -55.3 NC_002512.2 + 222247 0.73 0.717757
Target:  5'- cGUCGCCguggCGGGUcucgugauggccuGCGCCCugcuCGGGCGCu -3'
miRNA:   3'- -CAGUGGaa--GCUCA-------------UGUGGG----GCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 191890 0.73 0.728344
Target:  5'- uGUUACCUgggUGGGauuuccGCGCCUCGAGCGUg -3'
miRNA:   3'- -CAGUGGAa--GCUCa-----UGUGGGGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 10176 0.71 0.784122
Target:  5'- -cCGCCUcUC----GCGCCCCGAGCGCc -3'
miRNA:   3'- caGUGGA-AGcucaUGUGGGGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 58197 0.71 0.80177
Target:  5'- -aCGCUggUGAGUgggcgcggcgcGCACCCCGcGCGCg -3'
miRNA:   3'- caGUGGaaGCUCA-----------UGUGGGGCuCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.