miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8990 5' -55.3 NC_002512.2 + 128563 0.69 0.893482
Target:  5'- -cCACCUUCGAcgGC-CUCCGGGgGCc -3'
miRNA:   3'- caGUGGAAGCUcaUGuGGGGCUCgCG- -5'
8990 5' -55.3 NC_002512.2 + 121680 0.71 0.830405
Target:  5'- cGUCGCCgcCGAGUGCauaggagacguggccGCCCUGAaCGCc -3'
miRNA:   3'- -CAGUGGaaGCUCAUG---------------UGGGGCUcGCG- -5'
8990 5' -55.3 NC_002512.2 + 111091 0.7 0.835261
Target:  5'- uGUC-CCgcaugCGGGUGCGCaCCCGcGCGUa -3'
miRNA:   3'- -CAGuGGaa---GCUCAUGUG-GGGCuCGCG- -5'
8990 5' -55.3 NC_002512.2 + 33630 0.7 0.843214
Target:  5'- cUCGCCgaggCGAGagGCGCgCgCGGGCGCg -3'
miRNA:   3'- cAGUGGaa--GCUCa-UGUGgG-GCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 16875 0.7 0.85857
Target:  5'- -gCACC-UCGAGaGgGCCCCGGGCcCg -3'
miRNA:   3'- caGUGGaAGCUCaUgUGGGGCUCGcG- -5'
8990 5' -55.3 NC_002512.2 + 37383 0.7 0.85857
Target:  5'- aUguCCUcCGAGaAgACCUCGAGCGCg -3'
miRNA:   3'- cAguGGAaGCUCaUgUGGGGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 8202 0.7 0.865231
Target:  5'- cGUCGCCgggCGGGUguccGCgucccagacguagGCCUCGAGCGUc -3'
miRNA:   3'- -CAGUGGaa-GCUCA----UG-------------UGGGGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 121521 0.7 0.865961
Target:  5'- cGUCAUCcUCGGGga-GCUCCG-GCGCg -3'
miRNA:   3'- -CAGUGGaAGCUCaugUGGGGCuCGCG- -5'
8990 5' -55.3 NC_002512.2 + 72844 0.69 0.880139
Target:  5'- -cCGCCUUgcCGGGUccuCGCUCCGGGcCGCg -3'
miRNA:   3'- caGUGGAA--GCUCAu--GUGGGGCUC-GCG- -5'
8990 5' -55.3 NC_002512.2 + 70087 0.71 0.817998
Target:  5'- gGUCGCCagUUCGAucgucagGUGCAggCCGGGCGCg -3'
miRNA:   3'- -CAGUGG--AAGCU-------CAUGUggGGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 40820 0.71 0.80177
Target:  5'- cUCGCCgUCGAGaGCGCCgCCGGcCGCu -3'
miRNA:   3'- cAGUGGaAGCUCaUGUGG-GGCUcGCG- -5'
8990 5' -55.3 NC_002512.2 + 58197 0.71 0.80177
Target:  5'- -aCGCUggUGAGUgggcgcggcgcGCACCCCGcGCGCg -3'
miRNA:   3'- caGUGGaaGCUCA-----------UGUGGGGCuCGCG- -5'
8990 5' -55.3 NC_002512.2 + 122767 0.77 0.503038
Target:  5'- cGUCACCUaUCGGGUcguCucCCCCGAGgGCg -3'
miRNA:   3'- -CAGUGGA-AGCUCAu--Gu-GGGGCUCgCG- -5'
8990 5' -55.3 NC_002512.2 + 109525 0.75 0.610062
Target:  5'- cGUCACC-UCGugcacGUACACCCCcuucuGGGUGCa -3'
miRNA:   3'- -CAGUGGaAGCu----CAUGUGGGG-----CUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 116738 0.74 0.629966
Target:  5'- --gGCCgcggCGAGgccgGCGCCCCGcGCGCg -3'
miRNA:   3'- cagUGGaa--GCUCa---UGUGGGGCuCGCG- -5'
8990 5' -55.3 NC_002512.2 + 137138 0.74 0.669731
Target:  5'- cGUCGCCcgUCGucgGCGCCaucggaCCGAGCGCg -3'
miRNA:   3'- -CAGUGGa-AGCucaUGUGG------GGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 97873 0.73 0.709031
Target:  5'- cGUCGCCgcCGAGguccccccgGCGCCCgGGGCGg -3'
miRNA:   3'- -CAGUGGaaGCUCa--------UGUGGGgCUCGCg -5'
8990 5' -55.3 NC_002512.2 + 110502 0.73 0.709031
Target:  5'- cGUCAUgUUCGGGUugcggccgcGCGCCgCGAGCGa -3'
miRNA:   3'- -CAGUGgAAGCUCA---------UGUGGgGCUCGCg -5'
8990 5' -55.3 NC_002512.2 + 191890 0.73 0.728344
Target:  5'- uGUUACCUgggUGGGauuuccGCGCCUCGAGCGUg -3'
miRNA:   3'- -CAGUGGAa--GCUCa-----UGUGGGGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 10176 0.71 0.784122
Target:  5'- -cCGCCUcUC----GCGCCCCGAGCGCc -3'
miRNA:   3'- caGUGGA-AGcucaUGUGGGGCUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.