miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8990 5' -55.3 NC_002512.2 + 199386 0.66 0.976375
Target:  5'- cUCACCUUCacgaaccGGUggcGCACCCUGGGguUGCa -3'
miRNA:   3'- cAGUGGAAGc------UCA---UGUGGGGCUC--GCG- -5'
8990 5' -55.3 NC_002512.2 + 106918 0.67 0.954903
Target:  5'- -gCGCCcUCGc--GCACCCgcaCGAGCGCg -3'
miRNA:   3'- caGUGGaAGCucaUGUGGG---GCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 111324 0.67 0.950207
Target:  5'- --gACCUUgGAGaugccguuguugGCGUCCCGGGCGCg -3'
miRNA:   3'- cagUGGAAgCUCa-----------UGUGGGGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 188862 1.12 0.00356
Target:  5'- gGUCACCUUCGAGUACACCCCGAGCGCg -3'
miRNA:   3'- -CAGUGGAAGCUCAUGUGGGGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 185861 0.66 0.97389
Target:  5'- -gUACg-UCGAGgaggGCGCCUCGGGcCGCu -3'
miRNA:   3'- caGUGgaAGCUCa---UGUGGGGCUC-GCG- -5'
8990 5' -55.3 NC_002512.2 + 190990 0.66 0.97122
Target:  5'- cGUCGCCgagaagacCGcGUACugCCCGcGCGg -3'
miRNA:   3'- -CAGUGGaa------GCuCAUGugGGGCuCGCg -5'
8990 5' -55.3 NC_002512.2 + 183399 0.66 0.968359
Target:  5'- -aCACCgggaUCGAG-AUGCCCaaGAGCGUg -3'
miRNA:   3'- caGUGGa---AGCUCaUGUGGGg-CUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 102612 0.66 0.968359
Target:  5'- cUCGCCguccgUgGAGUcgcacaGCACCCgGAGCa- -3'
miRNA:   3'- cAGUGGa----AgCUCA------UGUGGGgCUCGcg -5'
8990 5' -55.3 NC_002512.2 + 44352 0.66 0.962044
Target:  5'- uUCGCCcugUG-GUGCGCCCUGuGUGUg -3'
miRNA:   3'- cAGUGGaa-GCuCAUGUGGGGCuCGCG- -5'
8990 5' -55.3 NC_002512.2 + 105907 0.67 0.958221
Target:  5'- cUCGCCgUCGucGUACacggaacgccagaGCCCCGAGgGUc -3'
miRNA:   3'- cAGUGGaAGCu-CAUG-------------UGGGGCUCgCG- -5'
8990 5' -55.3 NC_002512.2 + 117707 0.66 0.962044
Target:  5'- -gCACCUgcggCGGGUGCGCagcgacaUGGGUGCg -3'
miRNA:   3'- caGUGGAa---GCUCAUGUGgg-----GCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 187297 0.66 0.964986
Target:  5'- ----nCUUCGGGUcCGCCCCGccgcucgccucgcGGCGCc -3'
miRNA:   3'- cagugGAAGCUCAuGUGGGGC-------------UCGCG- -5'
8990 5' -55.3 NC_002512.2 + 108784 0.66 0.976375
Target:  5'- cGUCACCgaacucuaCGGGc-CGCUgCGGGCGCu -3'
miRNA:   3'- -CAGUGGaa------GCUCauGUGGgGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 189253 0.67 0.958579
Target:  5'- cGUCACCgUCGgggagaGGUACgucgagguccgGCCUCGcGGCGCg -3'
miRNA:   3'- -CAGUGGaAGC------UCAUG-----------UGGGGC-UCGCG- -5'
8990 5' -55.3 NC_002512.2 + 211278 0.66 0.97389
Target:  5'- -cCGCUUuugCGAGUGCGCC--GAGUGCg -3'
miRNA:   3'- caGUGGAa--GCUCAUGUGGggCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 218853 0.66 0.965303
Target:  5'- uUCGCCgaCGAGgucgcccgggGCACCgacgCCGuGCGCg -3'
miRNA:   3'- cAGUGGaaGCUCa---------UGUGG----GGCuCGCG- -5'
8990 5' -55.3 NC_002512.2 + 126384 0.67 0.958579
Target:  5'- -cCGCCcgggaGAGcGCccgggGCCCCGGGCGCc -3'
miRNA:   3'- caGUGGaag--CUCaUG-----UGGGGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 124166 0.67 0.951012
Target:  5'- --aACCagaggUGGGaGCggACCCCGAGCGCg -3'
miRNA:   3'- cagUGGaa---GCUCaUG--UGGGGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 185527 0.66 0.97389
Target:  5'- -cCGCuCUUCGAGggggugGCcuaccgGCCCCGcGGCGUg -3'
miRNA:   3'- caGUG-GAAGCUCa-----UG------UGGGGC-UCGCG- -5'
8990 5' -55.3 NC_002512.2 + 137238 0.66 0.968359
Target:  5'- gGUC-CCgaCGAGgACACCggcggCGAGCGCu -3'
miRNA:   3'- -CAGuGGaaGCUCaUGUGGg----GCUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.