miRNA display CGI


Results 21 - 40 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8990 5' -55.3 NC_002512.2 + 58197 0.71 0.80177
Target:  5'- -aCGCUggUGAGUgggcgcggcgcGCACCCCGcGCGCg -3'
miRNA:   3'- caGUGGaaGCUCA-----------UGUGGGGCuCGCG- -5'
8990 5' -55.3 NC_002512.2 + 88485 0.71 0.81038
Target:  5'- --gAUCUUCGGGUGgauccgcagcCGCUCCGGGUGCa -3'
miRNA:   3'- cagUGGAAGCUCAU----------GUGGGGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 70087 0.71 0.817998
Target:  5'- gGUCGCCagUUCGAucgucagGUGCAggCCGGGCGCg -3'
miRNA:   3'- -CAGUGG--AAGCU-------CAUGUggGGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 121680 0.71 0.830405
Target:  5'- cGUCGCCgcCGAGUGCauaggagacguggccGCCCUGAaCGCc -3'
miRNA:   3'- -CAGUGGaaGCUCAUG---------------UGGGGCUcGCG- -5'
8990 5' -55.3 NC_002512.2 + 111091 0.7 0.835261
Target:  5'- uGUC-CCgcaugCGGGUGCGCaCCCGcGCGUa -3'
miRNA:   3'- -CAGuGGaa---GCUCAUGUG-GGGCuCGCG- -5'
8990 5' -55.3 NC_002512.2 + 45859 0.7 0.835261
Target:  5'- uUCACUUgCGAGUucggAC-CCCCGGGCGa -3'
miRNA:   3'- cAGUGGAaGCUCA----UGuGGGGCUCGCg -5'
8990 5' -55.3 NC_002512.2 + 154475 0.7 0.835261
Target:  5'- -cCGCCcUCGAGgagGCACCUuuuuuggucgUGGGCGCg -3'
miRNA:   3'- caGUGGaAGCUCa--UGUGGG----------GCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 131991 0.7 0.835261
Target:  5'- gGUCGCg--UGGGc-CGCCCCGGGCGCc -3'
miRNA:   3'- -CAGUGgaaGCUCauGUGGGGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 180423 0.7 0.843214
Target:  5'- aGUCGuCCUcggUGAcgGCGCCCCGGGCGg -3'
miRNA:   3'- -CAGU-GGAa--GCUcaUGUGGGGCUCGCg -5'
8990 5' -55.3 NC_002512.2 + 33630 0.7 0.843214
Target:  5'- cUCGCCgaggCGAGagGCGCgCgCGGGCGCg -3'
miRNA:   3'- cAGUGGaa--GCUCa-UGUGgG-GCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 167292 0.7 0.85857
Target:  5'- cGUCACCcgCGAccuGUuccGCgACCCCGuGCGCc -3'
miRNA:   3'- -CAGUGGaaGCU---CA---UG-UGGGGCuCGCG- -5'
8990 5' -55.3 NC_002512.2 + 37383 0.7 0.85857
Target:  5'- aUguCCUcCGAGaAgACCUCGAGCGCg -3'
miRNA:   3'- cAguGGAaGCUCaUgUGGGGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 16875 0.7 0.85857
Target:  5'- -gCACC-UCGAGaGgGCCCCGGGCcCg -3'
miRNA:   3'- caGUGGaAGCUCaUgUGGGGCUCGcG- -5'
8990 5' -55.3 NC_002512.2 + 8202 0.7 0.865231
Target:  5'- cGUCGCCgggCGGGUguccGCgucccagacguagGCCUCGAGCGUc -3'
miRNA:   3'- -CAGUGGaa-GCUCA----UG-------------UGGGGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 121521 0.7 0.865961
Target:  5'- cGUCAUCcUCGGGga-GCUCCG-GCGCg -3'
miRNA:   3'- -CAGUGGaAGCUCaugUGGGGCuCGCG- -5'
8990 5' -55.3 NC_002512.2 + 72844 0.69 0.880139
Target:  5'- -cCGCCUUgcCGGGUccuCGCUCCGGGcCGCg -3'
miRNA:   3'- caGUGGAA--GCUCAu--GUGGGGCUC-GCG- -5'
8990 5' -55.3 NC_002512.2 + 101123 0.69 0.884231
Target:  5'- -gCGCCUcgUCGAGgguguccuugccCACCuuGAGCGCc -3'
miRNA:   3'- caGUGGA--AGCUCau----------GUGGggCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 94310 0.69 0.886917
Target:  5'- -cCACC--CGGuUGCGCCCCG-GCGCg -3'
miRNA:   3'- caGUGGaaGCUcAUGUGGGGCuCGCG- -5'
8990 5' -55.3 NC_002512.2 + 128563 0.69 0.893482
Target:  5'- -cCACCUUCGAcgGC-CUCCGGGgGCc -3'
miRNA:   3'- caGUGGAAGCUcaUGuGGGGCUCgCG- -5'
8990 5' -55.3 NC_002512.2 + 99245 0.69 0.893482
Target:  5'- -gCGCagaagUCGAGggACGCCCCGAGgaCGCc -3'
miRNA:   3'- caGUGga---AGCUCa-UGUGGGGCUC--GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.