miRNA display CGI


Results 21 - 40 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8990 5' -55.3 NC_002512.2 + 50456 0.67 0.944331
Target:  5'- uGUCAgggcuUCUUUGGGUcGCauagggaaaauucauGCCCCGGGUGCg -3'
miRNA:   3'- -CAGU-----GGAAGCUCA-UG---------------UGGGGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 58197 0.71 0.80177
Target:  5'- -aCGCUggUGAGUgggcgcggcgcGCACCCCGcGCGCg -3'
miRNA:   3'- caGUGGaaGCUCA-----------UGUGGGGCuCGCG- -5'
8990 5' -55.3 NC_002512.2 + 64236 0.67 0.946902
Target:  5'- --gGCCUgCGGGaagGC-CCCCGaAGCGCu -3'
miRNA:   3'- cagUGGAaGCUCa--UGuGGGGC-UCGCG- -5'
8990 5' -55.3 NC_002512.2 + 66376 0.67 0.942572
Target:  5'- cGUCAUgaUCGuGUGCGCaauCgCGGGCGCu -3'
miRNA:   3'- -CAGUGgaAGCuCAUGUGg--G-GCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 70087 0.71 0.817998
Target:  5'- gGUCGCCagUUCGAucgucagGUGCAggCCGGGCGCg -3'
miRNA:   3'- -CAGUGG--AAGCU-------CAUGUggGGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 71088 0.66 0.976375
Target:  5'- --gGCCgagaagUCGAcgACGCCCCGGGC-Ca -3'
miRNA:   3'- cagUGGa-----AGCUcaUGUGGGGCUCGcG- -5'
8990 5' -55.3 NC_002512.2 + 72791 0.69 0.89983
Target:  5'- cGUCGCCgggaCGGGccCGCCgUGGGCGCc -3'
miRNA:   3'- -CAGUGGaa--GCUCauGUGGgGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 72844 0.69 0.880139
Target:  5'- -cCGCCUUgcCGGGUccuCGCUCCGGGcCGCg -3'
miRNA:   3'- caGUGGAA--GCUCAu--GUGGGGCUC-GCG- -5'
8990 5' -55.3 NC_002512.2 + 73127 0.68 0.911865
Target:  5'- -aCGCCcgUCGAGUACACgCCCauGCGg -3'
miRNA:   3'- caGUGGa-AGCUCAUGUG-GGGcuCGCg -5'
8990 5' -55.3 NC_002512.2 + 77553 0.68 0.928235
Target:  5'- cGUCGCggacggCGGGU-CGCCCaCGGGCGUc -3'
miRNA:   3'- -CAGUGgaa---GCUCAuGUGGG-GCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 83792 0.67 0.954903
Target:  5'- -cCGCCgcCGAGgacCGCgUCGGGCGCg -3'
miRNA:   3'- caGUGGaaGCUCau-GUGgGGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 84339 0.66 0.97122
Target:  5'- cGUCGCCgcguccUCGAGcgggAUGCUCCGGcccgacGCGCa -3'
miRNA:   3'- -CAGUGGa-----AGCUCa---UGUGGGGCU------CGCG- -5'
8990 5' -55.3 NC_002512.2 + 84853 0.66 0.97122
Target:  5'- --gGCCguccCGGGcguUGCGCgCCCGGGCGUa -3'
miRNA:   3'- cagUGGaa--GCUC---AUGUG-GGGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 87805 0.67 0.938018
Target:  5'- -cCGCgUUCGGuUGCACCCCcAGCGa -3'
miRNA:   3'- caGUGgAAGCUcAUGUGGGGcUCGCg -5'
8990 5' -55.3 NC_002512.2 + 87971 0.75 0.580341
Target:  5'- cUCACCccgUCGGGgccgcgGCGCCCCGA-CGCg -3'
miRNA:   3'- cAGUGGa--AGCUCa-----UGUGGGGCUcGCG- -5'
8990 5' -55.3 NC_002512.2 + 88485 0.71 0.81038
Target:  5'- --gAUCUUCGGGUGgauccgcagcCGCUCCGGGUGCa -3'
miRNA:   3'- cagUGGAAGCUCAU----------GUGGGGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 88590 0.67 0.951012
Target:  5'- cGUCGCCgcCG-GUGC-CgCCGuGCGCg -3'
miRNA:   3'- -CAGUGGaaGCuCAUGuGgGGCuCGCG- -5'
8990 5' -55.3 NC_002512.2 + 90075 0.66 0.968359
Target:  5'- uUCGCCgggggCGGGUGgAUCuCCGuGUGCg -3'
miRNA:   3'- cAGUGGaa---GCUCAUgUGG-GGCuCGCG- -5'
8990 5' -55.3 NC_002512.2 + 94310 0.69 0.886917
Target:  5'- -cCACC--CGGuUGCGCCCCG-GCGCg -3'
miRNA:   3'- caGUGGaaGCUcAUGUGGGGCuCGCG- -5'
8990 5' -55.3 NC_002512.2 + 97873 0.73 0.709031
Target:  5'- cGUCGCCgcCGAGguccccccgGCGCCCgGGGCGg -3'
miRNA:   3'- -CAGUGGaaGCUCa--------UGUGGGgCUCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.