miRNA display CGI


Results 41 - 60 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8990 5' -55.3 NC_002512.2 + 98106 0.68 0.917548
Target:  5'- gGUCGCCUUCc----CGCCCCGcuugccggGGCGCu -3'
miRNA:   3'- -CAGUGGAAGcucauGUGGGGC--------UCGCG- -5'
8990 5' -55.3 NC_002512.2 + 99245 0.69 0.893482
Target:  5'- -gCGCagaagUCGAGggACGCCCCGAGgaCGCc -3'
miRNA:   3'- caGUGga---AGCUCa-UGUGGGGCUC--GCG- -5'
8990 5' -55.3 NC_002512.2 + 101123 0.69 0.884231
Target:  5'- -gCGCCUcgUCGAGgguguccuugccCACCuuGAGCGCc -3'
miRNA:   3'- caGUGGA--AGCUCau----------GUGGggCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 101871 0.67 0.938018
Target:  5'- -aCGCCggggCGGGUcuguucuGCCUCGGGCGCg -3'
miRNA:   3'- caGUGGaa--GCUCAug-----UGGGGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 102612 0.66 0.968359
Target:  5'- cUCGCCguccgUgGAGUcgcacaGCACCCgGAGCa- -3'
miRNA:   3'- cAGUGGa----AgCUCA------UGUGGGgCUCGcg -5'
8990 5' -55.3 NC_002512.2 + 103118 0.68 0.911865
Target:  5'- cGUCGCCgcCGccgccGCGCCCCGAGgCGUc -3'
miRNA:   3'- -CAGUGGaaGCuca--UGUGGGGCUC-GCG- -5'
8990 5' -55.3 NC_002512.2 + 103495 0.67 0.951012
Target:  5'- -gCGCC--CGGG---GCCCCGGGCGCu -3'
miRNA:   3'- caGUGGaaGCUCaugUGGGGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 105627 0.68 0.911865
Target:  5'- -aCGCCgccgUCGGGUGCACCgugucguacuCCGAGUa- -3'
miRNA:   3'- caGUGGa---AGCUCAUGUGG----------GGCUCGcg -5'
8990 5' -55.3 NC_002512.2 + 105907 0.67 0.958221
Target:  5'- cUCGCCgUCGucGUACacggaacgccagaGCCCCGAGgGUc -3'
miRNA:   3'- cAGUGGaAGCu-CAUG-------------UGGGGCUCgCG- -5'
8990 5' -55.3 NC_002512.2 + 106323 0.67 0.958579
Target:  5'- -gCGCCUUCGGcgGCucuCCCCGGuCGCu -3'
miRNA:   3'- caGUGGAAGCUcaUGu--GGGGCUcGCG- -5'
8990 5' -55.3 NC_002512.2 + 106918 0.67 0.954903
Target:  5'- -gCGCCcUCGc--GCACCCgcaCGAGCGCg -3'
miRNA:   3'- caGUGGaAGCucaUGUGGG---GCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 107834 0.68 0.923004
Target:  5'- cGUCACagccgcCGAcgcCGCCCCGGGCGUg -3'
miRNA:   3'- -CAGUGgaa---GCUcauGUGGGGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 108569 0.67 0.946902
Target:  5'- gGUCACCgugccgaucuuuUUCGGGgg-GCCCCGGGgaGCg -3'
miRNA:   3'- -CAGUGG------------AAGCUCaugUGGGGCUCg-CG- -5'
8990 5' -55.3 NC_002512.2 + 108784 0.66 0.976375
Target:  5'- cGUCACCgaacucuaCGGGc-CGCUgCGGGCGCu -3'
miRNA:   3'- -CAGUGGaa------GCUCauGUGGgGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 109525 0.75 0.610062
Target:  5'- cGUCACC-UCGugcacGUACACCCCcuucuGGGUGCa -3'
miRNA:   3'- -CAGUGGaAGCu----CAUGUGGGG-----CUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 110502 0.73 0.709031
Target:  5'- cGUCAUgUUCGGGUugcggccgcGCGCCgCGAGCGa -3'
miRNA:   3'- -CAGUGgAAGCUCA---------UGUGGgGCUCGCg -5'
8990 5' -55.3 NC_002512.2 + 111091 0.7 0.835261
Target:  5'- uGUC-CCgcaugCGGGUGCGCaCCCGcGCGUa -3'
miRNA:   3'- -CAGuGGaa---GCUCAUGUG-GGGCuCGCG- -5'
8990 5' -55.3 NC_002512.2 + 111324 0.67 0.950207
Target:  5'- --gACCUUgGAGaugccguuguugGCGUCCCGGGCGCg -3'
miRNA:   3'- cagUGGAAgCUCa-----------UGUGGGGCUCGCG- -5'
8990 5' -55.3 NC_002512.2 + 111424 0.66 0.976375
Target:  5'- aGUCuCCgcgacCGAGUAguUCCCGuAGUGCg -3'
miRNA:   3'- -CAGuGGaa---GCUCAUguGGGGC-UCGCG- -5'
8990 5' -55.3 NC_002512.2 + 111861 0.66 0.962379
Target:  5'- cGUCGCCgcguccucgucguaCGGGUcCACCCCGuGCa- -3'
miRNA:   3'- -CAGUGGaa------------GCUCAuGUGGGGCuCGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.